RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 BPY2O14599 106 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 APCSP02743 223 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 IGKV3-11P04433 115 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 SLC25A5P05141 298 aaKnown RBP2.25□□□□□ -2.05
NUP88-209ENST00000574855 CD2P06729 351 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 ASAH2BP0C7U1 165 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 ZNF688P0C7X2 276 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 TLX1NBP0CAT3 122 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 IGHV1-8P0DP01 117 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 S100A4P26447 101 aaKnown RBP2.25□□□□□ -2.05
NUP88-209ENST00000574855 RNASE4P34096 147 aaKnown RBP2.25□□□□□ -2.05
NUP88-209ENST00000574855 SRP14P37108 136 aaKnown RBP2.25□□□□□ -2.05
NUP88-209ENST00000574855 DYNLT3P51808 116 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 CAV3P56539 151 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 FXYD6P3P58550 94 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 TPPP2P59282 170 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 EIF5AP63241 154 aaKnown RBP2.25□□□□□ -2.05
NUP88-209ENST00000574855 HBBP68871 147 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 DCDP81605 110 aaKnown RBP2.25□□□□□ -2.05
NUP88-209ENST00000574855 ZNF79Q15937 498 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 NNATQ16517 81 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 FAM104BQ5XKR9 115 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 ZNF880Q6PDB4 577 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 AMTNQ6UX39 209 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 TMEM91Q6ZNR0 172 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 Q6ZS52 159 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 ADM2Q7Z4H4 148 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 CEND1Q8N111 149 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 LINC00311Q8N616 119 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 DEFB119Q8N690 84 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 C15orf56Q8N910 161 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 SUMF2Q8NBJ7 301 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 WFDC11Q8NEX6 87 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 OR10AC1Q8NH08 325 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 ITLN2Q8WWU7 325 aaPredicted RBP2.25□□□□□ -2.05
NUP88-209ENST00000574855 HYLS1Q96M11 299 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 Q96M85 177 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 LINC00167Q96N53 147 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 CIB3Q96Q77 187 aaPredicted RBP2.25□□□□□ -2.05
NUP88-209ENST00000574855 MIEN1Q9BRT3 115 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 C16orf95Q9H693 158 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 SLC39A9Q9NUM3 307 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 ZNF586Q9NXT0 402 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 PHLDA3Q9Y5J5 127 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 MPC1Q9Y5U8 109 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 V9GYS6 101 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 MYO10Q9HD67 2058 aa2.25□□□□□ -2.05
NUP88-209ENST00000574855 KIF26AQ9ULI4 1882 aaPredicted RBP2.24□□□□□ -2.05
NUP88-209ENST00000574855 KIAA1549LQ6ZVL6 1849 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 PTPRBP23467 1997 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 IGKV1D-42A0A075B6H8 117 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 IGLV11-55A0A075B6I3 123 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 IGKV3D-11A0A0A0MRZ8 115 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 TRBV27A0A0K0K1C4 114 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 LEPROTO15243 131 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 NDUFB3O43676 98 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 INSP01308 110 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 GYPBP06028 91 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 GZMBP10144 247 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 CD28P10747 220 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 TSPEAR-AS2P59090 65 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 ZNF117Q03924 483 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 SSBP1Q04837 148 aaKnown RBP2.24□□□□□ -2.05
NUP88-209ENST00000574855 RPL18Q07020 188 aaKnown RBP2.24□□□□□ -2.05
NUP88-209ENST00000574855 CATR1Q13166 79 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 NTM-AS1Q6ZSK4 140 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 ZNF767PQ75MW2 155 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 C10orf126Q8N4M7 172 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 RNF182Q8N6D2 247 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 ZFAND2AQ8N6M9 145 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 OTOSQ8NHW6 89 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 ZNF431Q8TF32 576 aaPredicted RBP2.24□□□□□ -2.05
NUP88-209ENST00000574855 SMIM4Q8WVI0 70 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 RBPMSQ93062 196 aaKnown RBP2.24□□□□□ -2.05
NUP88-209ENST00000574855 CHCHD7Q9BUK0 85 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 DEFB126Q9BYW3 111 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 RPP21Q9H633 154 aaKnown RBP2.24□□□□□ -2.05
NUP88-209ENST00000574855 RPRMQ9NS64 109 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 ZNF222Q9UK12 451 aa2.24□□□□□ -2.05
NUP88-209ENST00000574855 KIAA0100Q14667 2235 aaKnown RBP2.23□□□□□ -2.05
NUP88-209ENST00000574855 IGLV3-12A0A075B6K2 115 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 IGHV3-21A0A0B4J1V1 117 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 A0A0J9YW62 118 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 C7orf66A4D0T2 115 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 OR2T8A6NH00 312 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 SNRPGP15A8MWD9 76 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 CREBL2O60519 120 aaPredicted RBP2.23□□□□□ -2.05
NUP88-209ENST00000574855 CLPSP04118 112 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 IGKV1-16P04430 117 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 IL5P05113 134 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 GIG44P09565 113 aaPredicted RBP2.23□□□□□ -2.05
NUP88-209ENST00000574855 OR5AC1P0C628 307 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 P0C879 139 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 PYYP10082 97 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 HLA-DRB4P13762 266 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 IL9P15248 144 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 NPPCP23582 126 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 TMEM258P61165 79 aa2.23□□□□□ -2.05
NUP88-209ENST00000574855 YPEL3P61236 119 aaPredicted RBP2.23□□□□□ -2.05
NUP88-209ENST00000574855 INSL4Q14641 139 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms