RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 OR10G7Q8NGN6 311 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 PSMG3Q9BT73 122 aaPredicted RBP5.75□□□□□ -1.49
VPS53-214ENST00000572607 AGPAT4-IT1Q9H0P7 198 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 Q9H3A6 140 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 WFDC1Q9HC57 220 aa5.75□□□□□ -1.49
VPS53-214ENST00000572607 NOP10Q9NPE3 64 aaKnown RBP5.75□□□□□ -1.49
VPS53-214ENST00000572607 BORCS7-ASMTA0A0B4J1R7 106 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 RBAKDNA6NC62 111 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 RGS13O14921 159 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 NMBP08949 121 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 RNASE4P34096 147 aaKnown RBP5.74□□□□□ -1.49
VPS53-214ENST00000572607 CDC34P49427 236 aaPredicted RBP5.74□□□□□ -1.49
VPS53-214ENST00000572607 ZNF138P52744 262 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 TMEM88Q6PEY1 159 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 EIF4E3Q8N5X7 224 aaKnown RBP5.74□□□□□ -1.49
VPS53-214ENST00000572607 C15orf53Q8NAA6 179 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 OR2T35Q8NGX2 323 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 OR2G3Q8NGZ4 309 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 RNASE8Q8TDE3 154 aaKnown RBP5.74□□□□□ -1.49
VPS53-214ENST00000572607 HYLS1Q96M11 299 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 ARPC5LQ9BPX5 153 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 RPH3ALQ9UNE2 315 aa5.74□□□□□ -1.49
VPS53-214ENST00000572607 TRBV7-9A0A0J9YWB2 115 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 PLAC8L1A1L4L8 177 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 PGPA6NDG6 321 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 KLLNB2CW77 178 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 CRISP2P16562 243 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 ATP6V0CP27449 155 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 SERF2P84101 59 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 BTN1A1Q13410 526 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 POM121L12Q8N7R1 296 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 GNPNAT1Q96EK6 184 aaPredicted RBP5.73□□□□□ -1.49
VPS53-214ENST00000572607 ZNF503Q96F45 646 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 FAM19A4Q96LR4 140 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 VGLL1Q99990 258 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 ATG101Q9BSB4 218 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 ACTR3CQ9C0K3 210 aaPredicted RBP5.73□□□□□ -1.49
VPS53-214ENST00000572607 OTORQ9NRC9 128 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 ZNF492Q9P255 531 aa5.73□□□□□ -1.49
VPS53-214ENST00000572607 DNAH11Q96DT5 4516 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 GAGE12BA1L429 117 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 DIRC3C9JPN6 131 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 HMGB3O15347 200 aaKnown RBP5.72□□□□□ -1.49
VPS53-214ENST00000572607 EIF3GO75821 320 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS53-214ENST00000572607 GAGE7O76087 117 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 NUDT3O95989 172 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 GAGE12FP0CL80 117 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 GAGE12GP0CL81 117 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 GAGE12IP0CL82 117 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 STAG3L2P0CL84 134 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 STAG3L3P0CL85 134 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 CD300CQ08708 224 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 OR5I1Q13606 314 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 ANXA2RQ3ZCQ2 193 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 IQCF2Q8IXL9 164 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 Q8TAT8 98 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 LINC00467Q9BRT7 94 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 TNFSF18Q9UNG2 199 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 LENEPQ9Y5L5 61 aa5.72□□□□□ -1.49
VPS53-214ENST00000572607 TRGV2A0A075B6R0 118 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 IGHV1OR15-1A0A075B7D0 117 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 TRGV1A0A0A0MS02 117 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 SERTM2A0A1B0GWG4 89 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 K7EQM0 130 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 TAAR5O14804 337 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 ARPC5O15511 151 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 CXorf1O96002 111 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 ARL14EPLP0DKL9 152 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 ZNF415Q09FC8 603 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 DAZ2Q13117 558 aaKnown RBP5.71□□□□□ -1.5
VPS53-214ENST00000572607 RNF212Q495C1 297 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 Q5BKY6 102 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 RPL7L1Q6DKI1 246 aaKnown RBP5.71□□□□□ -1.5
VPS53-214ENST00000572607 GOLT1AQ6ZVE7 132 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 ZFAND2AQ8N6M9 145 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 ARL6IP6Q8N6S5 226 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 TMED6Q8WW62 240 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 RAB24Q969Q5 203 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 ST6GAL2Q96JF0 529 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 NDFIP1Q9BT67 221 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 GSN-AS1Q9NRJ2 163 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 TMEM167BQ9NRX6 74 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 PKD1P98161 4303 aa5.71□□□□□ -1.5
VPS53-214ENST00000572607 RNF222A6NCQ9 220 aa5.7□□□□□ -1.5
VPS53-214ENST00000572607 ZNF324O75467 553 aaPredicted RBP5.7□□□□□ -1.5
VPS53-214ENST00000572607 GCHFRP30047 84 aa5.7□□□□□ -1.5
VPS53-214ENST00000572607 FAM3BP58499 235 aaPredicted RBP5.7□□□□□ -1.5
VPS53-214ENST00000572607 AKR1C8PQ5T2L2 129 aa5.7□□□□□ -1.5
VPS53-214ENST00000572607 IBA57Q5T440 356 aaKnown RBP5.7□□□□□ -1.5
VPS53-214ENST00000572607 FAM159AQ6UWV7 190 aa5.7□□□□□ -1.5
VPS53-214ENST00000572607 LINC00612Q8N6U2 182 aa5.7□□□□□ -1.5
VPS53-214ENST00000572607 SH3BGRL3Q9H299 93 aa5.7□□□□□ -1.5
VPS53-214ENST00000572607 TRGV11A0A075B6L2 103 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 TRAV21A0A0B4J279 112 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 CTXND1A0A1B0GTU2 59 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 CCL18P55774 89 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 TCL1AP56279 114 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 ZFP69Q49AA0 526 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 PRR9Q5T870 116 aa5.69□□□□□ -1.5
VPS53-214ENST00000572607 Q6ZTI0 123 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms