RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 GNG13Q9P2W3 67 aa14.89□□□□□ -0.03
VPS53-210ENST00000571456 KIAA1109Q2LD37 5005 aa14.88□□□□□ -0.03
VPS53-210ENST00000571456 TRAV12-2A0A075B6T6 113 aa14.88□□□□□ -0.03
VPS53-210ENST00000571456 C11orf94C9JXX5 98 aa14.88□□□□□ -0.03
VPS53-210ENST00000571456 TAS2R60P59551 318 aa14.88□□□□□ -0.03
VPS53-210ENST00000571456 RRN3P1Q2M238 152 aa14.88□□□□□ -0.03
VPS53-210ENST00000571456 ZFAND2AQ8N6M9 145 aa14.88□□□□□ -0.03
VPS53-210ENST00000571456 FMC1Q96HJ9 113 aa14.88□□□□□ -0.03
VPS53-210ENST00000571456 PYGO2Q9BRQ0 406 aa14.88□□□□□ -0.03
VPS53-210ENST00000571456 TRBV6-1A0A0K0K1D8 114 aa14.87□□□□□ -0.03
VPS53-210ENST00000571456 Q8NAQ8 132 aa14.87□□□□□ -0.03
VPS53-210ENST00000571456 ZNF680Q8NEM1 530 aa14.87□□□□□ -0.03
VPS53-210ENST00000571456 LINC01587Q99440 93 aa14.87□□□□□ -0.03
VPS53-210ENST00000571456 LINC00467Q9BRT7 94 aa14.87□□□□□ -0.03
VPS53-210ENST00000571456 PSG8Q9UQ74 426 aa14.87□□□□□ -0.03
VPS53-210ENST00000571456 KLF12Q9Y4X4 402 aa14.87□□□□□ -0.03
VPS53-210ENST00000571456 TEX48A0A1B0GUV7 120 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 PDE6DO43924 150 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 PRB4P10163 310 aaPredicted RBP14.86□□□□□ -0.03
VPS53-210ENST00000571456 BCL2P10415 239 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 ATP5G3P48201 142 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 UBE2G1P62253 170 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 CCL20P78556 96 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 MEF2BQ02080 365 aaPredicted RBP14.86□□□□□ -0.03
VPS53-210ENST00000571456 ZNF493Q6ZR52 646 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 Q8TAT8 98 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 TREM1Q9NP99 234 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 ZFP30Q9Y2G7 519 aa14.86□□□□□ -0.03
VPS53-210ENST00000571456 IGHV3OR16-12A0A075B7B8 117 aa14.85□□□□□ -0.03
VPS53-210ENST00000571456 IGLV2-11P01706 119 aa14.85□□□□□ -0.03
VPS53-210ENST00000571456 AKR1C3P42330 323 aa14.85□□□□□ -0.03
VPS53-210ENST00000571456 Q6AWC8 147 aa14.85□□□□□ -0.03
VPS53-210ENST00000571456 VAX2Q9UIW0 290 aa14.85□□□□□ -0.03
VPS53-210ENST00000571456 TRAV8-1A0A0A6YYK1 113 aa14.84□□□□□ -0.03
VPS53-210ENST00000571456 TRAV12-3A0A0B4J271 114 aa14.84□□□□□ -0.03
VPS53-210ENST00000571456 IGHV4-28A0A0C4DH34 117 aa14.84□□□□□ -0.03
VPS53-210ENST00000571456 NDUFS6O75380 124 aaKnown RBP14.84□□□□□ -0.03
VPS53-210ENST00000571456 RNASE4P34096 147 aaKnown RBP14.84□□□□□ -0.03
VPS53-210ENST00000571456 TMEM183BQ1AE95 376 aa14.84□□□□□ -0.03
VPS53-210ENST00000571456 C11orf52Q96A22 123 aa14.84□□□□□ -0.03
VPS53-210ENST00000571456 A0A0J9YWU9 116 aa14.83□□□□□ -0.04
VPS53-210ENST00000571456 ZNF324O75467 553 aaPredicted RBP14.83□□□□□ -0.04
VPS53-210ENST00000571456 C16orf74Q96GX8 76 aa14.83□□□□□ -0.04
VPS53-210ENST00000571456 TRAV21A0A0B4J279 112 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 J3KRW8 73 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 RBMY1A1P0DJD3 496 aaKnown RBP14.82□□□□□ -0.04
VPS53-210ENST00000571456 RBMY1CP0DJD4 496 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 BTN1A1Q13410 526 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 RBMY1FQ15415 496 aaKnown RBP14.82□□□□□ -0.04
VPS53-210ENST00000571456 SMUG1Q53HV7 270 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 COX8CQ7Z4L0 72 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 PRNTQ86SH4 94 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 C2CD4CQ8TF44 421 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 TMEM263Q8WUH6 116 aaKnown RBP14.82□□□□□ -0.04
VPS53-210ENST00000571456 HECTD4Q9Y4D8 3996 aa14.82□□□□□ -0.04
VPS53-210ENST00000571456 LOC102723971A0A1B0GUV8 181 aa14.81□□□□□ -0.04
VPS53-210ENST00000571456 KIR3DS1Q14943 382 aa14.81□□□□□ -0.04
VPS53-210ENST00000571456 Q86TA4 180 aa14.81□□□□□ -0.04
VPS53-210ENST00000571456 ANXA2RQ3ZCQ2 193 aa14.8□□□□□ -0.04
VPS53-210ENST00000571456 EIF4E3Q8N5X7 224 aaKnown RBP14.8□□□□□ -0.04
VPS53-210ENST00000571456 SCO2A0A1W2PP80 73 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 RBFOX3A6NFN3 312 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 RGS13O14921 159 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 LTAP01374 205 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 PRR9Q5T870 116 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 ZNF767PQ75MW2 155 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 TVP23CQ96ET8 276 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 KCNS1Q96KK3 526 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 SGK494Q96LW2 274 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 LINC00479Q96M42 142 aa14.79□□□□□ -0.04
VPS53-210ENST00000571456 IGHV1OR15-1A0A075B7D0 117 aa14.78□□□□□ -0.04
VPS53-210ENST00000571456 TRAV34A0A0B4J273 112 aa14.78□□□□□ -0.04
VPS53-210ENST00000571456 PFN1P07737 140 aaKnown RBP14.78□□□□□ -0.04
VPS53-210ENST00000571456 RAB14P61106 215 aa14.78□□□□□ -0.04
VPS53-210ENST00000571456 TDRG1Q3Y452 100 aa14.78□□□□□ -0.04
VPS53-210ENST00000571456 ZNF506Q5JVG8 444 aa14.78□□□□□ -0.04
VPS53-210ENST00000571456 FAM159AQ6UWV7 190 aa14.78□□□□□ -0.04
VPS53-210ENST00000571456 SMIM12Q96EX1 92 aa14.78□□□□□ -0.04
VPS53-210ENST00000571456 ZNF705GA8MUZ8 300 aaPredicted RBP14.77□□□□□ -0.05
VPS53-210ENST00000571456 TMEM250H0YL14 139 aa14.77□□□□□ -0.05
VPS53-210ENST00000571456 GCGP01275 180 aa14.77□□□□□ -0.05
VPS53-210ENST00000571456 SPART-AS1P0CW21 52 aa14.77□□□□□ -0.05
VPS53-210ENST00000571456 IBA57Q5T440 356 aaKnown RBP14.77□□□□□ -0.05
VPS53-210ENST00000571456 TMEM183AQ8IXX5 376 aa14.77□□□□□ -0.05
VPS53-210ENST00000571456 C11orf45Q8TAV5 145 aa14.77□□□□□ -0.05
VPS53-210ENST00000571456 RNASE8Q8TDE3 154 aaKnown RBP14.77□□□□□ -0.05
VPS53-210ENST00000571456 LINC00476Q8WZB0 136 aa14.77□□□□□ -0.05
VPS53-210ENST00000571456 KMT2AQ03164 3969 aa14.76□□□□□ -0.05
VPS53-210ENST00000571456 CXorf65A6NEN9 183 aa14.76□□□□□ -0.05
VPS53-210ENST00000571456 LYRM9A8MSI8 78 aa14.76□□□□□ -0.05
VPS53-210ENST00000571456 FAM210AQ96ND0 272 aa14.76□□□□□ -0.05
VPS53-210ENST00000571456 SMDT1Q9H4I9 107 aa14.76□□□□□ -0.05
VPS53-210ENST00000571456 TRGV11A0A075B6L2 103 aa14.75□□□□□ -0.05
VPS53-210ENST00000571456 CBY3A6NI87 242 aa14.75□□□□□ -0.05
VPS53-210ENST00000571456 FABP5P3A8MUU1 101 aa14.75□□□□□ -0.05
VPS53-210ENST00000571456 HTN1P15515 57 aa14.75□□□□□ -0.05
VPS53-210ENST00000571456 RPL35P42766 123 aaKnown RBP14.75□□□□□ -0.05
VPS53-210ENST00000571456 MED9Q9NWA0 146 aa14.75□□□□□ -0.05
VPS53-210ENST00000571456 TIMM8BQ9Y5J9 83 aaPredicted RBP14.75□□□□□ -0.05
VPS53-210ENST00000571456 SNURFLB1AK76 121 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms