RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 PCP2Q8IVA1 136 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 MSRB3Q8IXL7 192 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 ZNF525Q8N782 197 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 OR11G2Q8NGC1 345 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 RPS4Y2Q8TD47 263 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 NAT14Q8WUY8 206 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 SFT2D1Q8WV19 159 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 C2orf50Q96LR7 162 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 TMEM70Q9BUB7 260 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 C11orf1Q9H5F2 150 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 LINC00574Q9H8X3 128 aa1.97□□□□□ -2.09
VPS35-209ENST00000568642 BOKQ9UMX3 212 aaPredicted RBP1.97□□□□□ -2.09
VPS35-209ENST00000568642 HUWE1Q7Z6Z7 4374 aaKnown RBP1.96□□□□□ -2.1
VPS35-209ENST00000568642 ZFP92A6NM28 416 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 KRTAP9-6A8MVA2 160 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 TMEM256-PLSCR3K7ERE1 68 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 OR2T1O43869 369 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 GPX1P07203 203 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 CXCL1P09341 107 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 OR5AC1P0C628 307 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 IGHV1-8P0DP01 117 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 NTF3P20783 257 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 S100A2P29034 98 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 AKR1D1P51857 326 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 TMBIM6P55061 237 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 FOXA3P55318 350 aaPredicted RBP1.96□□□□□ -2.1
VPS35-209ENST00000568642 TAS2R20P59543 309 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 RHOGP84095 191 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 SYCNQ0VAF6 134 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 MSMO1Q15800 293 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 UBE2SQ16763 222 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 Q6ZR03 302 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 SSX8Q7RTT4 187 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 ZNF101Q8IZC7 436 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 C9orf62Q8N4C0 152 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 LINC00311Q8N616 119 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 OR51A4Q8NGJ6 313 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 ISOC1Q96CN7 298 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 CAMK2N2Q96S95 79 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 DERL1Q9BUN8 251 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 COMMD5Q9GZQ3 224 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 TUBA4BQ9H853 241 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 DNAJC12Q9UKB3 198 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 MOB4Q9Y3A3 225 aa1.96□□□□□ -2.1
VPS35-209ENST00000568642 DOCK11Q5JSL3 2073 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 DSPPQ9NZW4 1301 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 TRAV9-1A0A075B6T8 112 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 IGHV3-64DA0A0J9YX35 117 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 C20orf202A1L168 122 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 LINC00862A6NCI5 91 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 GGT3PA6NGU5 568 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 A8MUU9 505 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 GGTLC3B5MD39 225 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 M0R2Z0 102 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 LECT2O14960 151 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 DPM2O94777 84 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 MPC2O95563 127 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 CD28P10747 220 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 MDKP21741 143 aaPredicted RBP1.95□□□□□ -2.1
VPS35-209ENST00000568642 PKIAP61925 76 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 UBA52P62987 128 aaKnown RBP1.95□□□□□ -2.1
VPS35-209ENST00000568642 PPP3R1P63098 170 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 QRFPP83859 136 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 HOXC5Q00444 222 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 IL17AQ16552 155 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 MRPL51Q4U2R6 128 aaKnown RBP1.95□□□□□ -2.1
VPS35-209ENST00000568642 KIAA2026Q5HYC2 2103 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 AADACL3Q5VUY0 350 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 TIFABQ6ZNK6 161 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 SCXQ7RTU7 201 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 CAMK2N1Q7Z7J9 78 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 DAND5Q8N907 189 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 OR2T10Q8NGZ9 312 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 OR4K13Q8NH42 304 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 TERB2Q8NHR7 220 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 HDHD3Q9BSH5 251 aaPredicted RBP1.95□□□□□ -2.1
VPS35-209ENST00000568642 MDFICQ9P1T7 246 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 MARCOQ9UEW3 520 aaPredicted RBP1.95□□□□□ -2.1
VPS35-209ENST00000568642 BAIAP2Q9UQB8 552 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 PHLDA3Q9Y5J5 127 aa1.95□□□□□ -2.1
VPS35-209ENST00000568642 DNAH10Q8IVF4 4471 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 IGHV1-58A0A0C4DH39 117 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 C19orf71A6NCJ1 209 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 A8MWP6 167 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 FAM72CH0Y354 149 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 I3L521 148 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 K7ERJ3 54 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 GGCTO75223 188 aaKnown RBP1.94□□□□□ -2.1
VPS35-209ENST00000568642 IGKV1D-33P01593 117 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 IGKV1-33P01594 117 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 APCSP02743 223 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 UQCRHP07919 91 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 IGHV3-30-3P0DP02 117 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 SLC25A16P16260 332 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 HIST1H1BP16401 226 aaKnown RBP1.94□□□□□ -2.1
VPS35-209ENST00000568642 FGF7P21781 194 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 NFYBP25208 207 aa1.94□□□□□ -2.1
VPS35-209ENST00000568642 RPL22P35268 128 aaKnown RBP1.94□□□□□ -2.1
VPS35-209ENST00000568642 RBM11P57052 281 aaKnown RBP1.94□□□□□ -2.1
VPS35-209ENST00000568642 TSPEAR-AS2P59090 65 aa1.94□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms