RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 NEU1Q99519 415 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 MAP1LC3BQ9GZQ8 125 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 ZNF492Q9P255 531 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 DKK2Q9UBU2 259 aa9.85□□□□□ -0.83
CLN3-235ENST00000568497 CXorf1O96002 111 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 C1QBP02746 253 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 AMBPP02760 352 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 DEFB130BP0DP73 79 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 DEFB130AP0DP74 79 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 ZNF138P52744 262 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 FAM74A1Q5RGS3 127 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 TMEM78Q5T7P6 136 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 CMTM2Q8TAZ6 248 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 LINC00477Q96M19 166 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 C8orf49Q96NF6 230 aa9.84□□□□□ -0.83
CLN3-235ENST00000568497 KLLNB2CW77 178 aa9.83□□□□□ -0.84
CLN3-235ENST00000568497 GPX1P07203 203 aa9.83□□□□□ -0.84
CLN3-235ENST00000568497 TSPOP30536 169 aa9.83□□□□□ -0.84
CLN3-235ENST00000568497 C9orf62Q8N4C0 152 aa9.83□□□□□ -0.84
CLN3-235ENST00000568497 SUN5Q8TC36 379 aa9.83□□□□□ -0.84
CLN3-235ENST00000568497 NOP10Q9NPE3 64 aaKnown RBP9.83□□□□□ -0.84
CLN3-235ENST00000568497 SMIM9A6NGZ8 99 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 ZNF324O75467 553 aaPredicted RBP9.82□□□□□ -0.84
CLN3-235ENST00000568497 CDK2AP2O75956 126 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 SPART-AS1P0CW21 52 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 ATP5G3P48201 142 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 TAS2R60P59551 318 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 CCL20P78556 96 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 SFT2D1Q8WV19 159 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 GSN-AS1Q9NRJ2 163 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 NAGKQ9UJ70 344 aa9.82□□□□□ -0.84
CLN3-235ENST00000568497 DEFB131BA0A096LNP1 70 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 C16orf90A8MZG2 172 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 H7BYZ3 331 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 ZNF80P51504 273 aaPredicted RBP9.81□□□□□ -0.84
CLN3-235ENST00000568497 PRNTQ86SH4 94 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 LYPD1Q8N2G4 141 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 RNASE8Q8TDE3 154 aaKnown RBP9.81□□□□□ -0.84
CLN3-235ENST00000568497 ODF3Q96PU9 254 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 NIPSNAP3BQ9BS92 247 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 TMEM167BQ9NRX6 74 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 KLF12Q9Y4X4 402 aa9.81□□□□□ -0.84
CLN3-235ENST00000568497 DMBT1Q9UGM3 2413 aaPredicted RBP9.81□□□□□ -0.84
CLN3-235ENST00000568497 FAM74A7A6NL05 159 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 C11orf94C9JXX5 98 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 IGLV2-11P01706 119 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 TCRAP04437 139 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 SEC11BP0C7V7 166 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 TPT1P13693 172 aaKnown RBP9.8□□□□□ -0.84
CLN3-235ENST00000568497 CRISP2P16562 243 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 DAD1P61803 113 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 Q8N1X5 172 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 TMEM75Q8N9X5 138 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 RXFP4Q8TDU9 374 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 SCRT2Q9NQ03 307 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 EPDR1Q9UM22 224 aa9.8□□□□□ -0.84
CLN3-235ENST00000568497 IGHV4-4A0A075B6R2 117 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 GAGE12BA1L429 117 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 CBY3A6NI87 242 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 PAGE4O60829 102 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 GAGE7O76087 117 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 IFNA7P01567 189 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 GAGE12FP0CL80 117 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 GAGE12GP0CL81 117 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 GAGE12IP0CL82 117 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 ZFP69Q49AA0 526 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 CST9LP1Q5W188 147 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 PSG8Q9UQ74 426 aa9.79□□□□□ -0.84
CLN3-235ENST00000568497 TRAV10A0A0B4J240 114 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 RBAKDNA6NC62 111 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 RGS13O14921 159 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 GNRH2O43555 120 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 SOHLH1Q5JUK2 328 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 Q6ZTI0 123 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 TMEM256Q8N2U0 113 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 POM121L12Q8N7R1 296 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 C5orf17Q8NAS9 161 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 C11orf72Q8NBR9 251 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 STOML3Q8TAV4 291 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 TREM1Q9NP99 234 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 MDFICQ9P1T7 246 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 C11orf21Q9P2W6 132 aa9.78□□□□□ -0.84
CLN3-235ENST00000568497 TMEM189A5PLL7 270 aa9.77□□□□□ -0.85
CLN3-235ENST00000568497 PEX7O00628 323 aa9.77□□□□□ -0.85
CLN3-235ENST00000568497 TMEM263Q8WUH6 116 aaKnown RBP9.77□□□□□ -0.85
CLN3-235ENST00000568497 MBD3L1Q8WWY6 194 aa9.77□□□□□ -0.85
CLN3-235ENST00000568497 C16orf74Q96GX8 76 aa9.77□□□□□ -0.85
CLN3-235ENST00000568497 MRPL16Q9NX20 251 aaKnown RBP9.77□□□□□ -0.85
CLN3-235ENST00000568497 IGLV2-18A0A075B6J9 118 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 IGHV1OR15-1A0A075B7D0 117 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 A0A1W2PRE2 83 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 IGHV3-53P01767 116 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 H2AFB1P0C5Y9 115 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 P0DMU3 169 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 FAM231AP0DMU4 169 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 FAM231CP0DMU5 169 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 TMEM183BQ1AE95 376 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 LGALS9BQ3B8N2 356 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 ANXA2RQ3ZCQ2 193 aa9.76□□□□□ -0.85
CLN3-235ENST00000568497 TMEM88Q6PEY1 159 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms