RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 SPART-AS1P0CW21 52 aa15.79■□□□□ 0.12
CLN3-234ENST00000568472 FLI1Q01543 452 aaPredicted RBP15.79■□□□□ 0.12
CLN3-234ENST00000568472 BTN1A1Q13410 526 aa15.79■□□□□ 0.12
CLN3-234ENST00000568472 C16orf74Q96GX8 76 aa15.79■□□□□ 0.12
CLN3-234ENST00000568472 PSG8Q9UQ74 426 aa15.79■□□□□ 0.12
CLN3-234ENST00000568472 IFNA1P01562 189 aa15.78■□□□□ 0.12
CLN3-234ENST00000568472 TMEM263Q8WUH6 116 aaKnown RBP15.78■□□□□ 0.12
CLN3-234ENST00000568472 GNG13Q9P2W3 67 aa15.78■□□□□ 0.12
CLN3-234ENST00000568472 IGLV2-11P01706 119 aa15.77■□□□□ 0.12
CLN3-234ENST00000568472 S100A9P06702 114 aaKnown RBP15.77■□□□□ 0.12
CLN3-234ENST00000568472 HTN1P15515 57 aa15.77■□□□□ 0.12
CLN3-234ENST00000568472 TAGLN2P37802 199 aaKnown RBP15.77■□□□□ 0.12
CLN3-234ENST00000568472 CCL20P78556 96 aa15.77■□□□□ 0.12
CLN3-234ENST00000568472 Q6AWC8 147 aa15.77■□□□□ 0.12
CLN3-234ENST00000568472 KLF12Q9Y4X4 402 aa15.77■□□□□ 0.12
CLN3-234ENST00000568472 C11orf94C9JXX5 98 aa15.76■□□□□ 0.11
CLN3-234ENST00000568472 ATP5G3P48201 142 aa15.76■□□□□ 0.11
CLN3-234ENST00000568472 EMP1P54849 157 aa15.76■□□□□ 0.11
CLN3-234ENST00000568472 FMC1Q96HJ9 113 aa15.76■□□□□ 0.11
CLN3-234ENST00000568472 RGS13O14921 159 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 AZU1P20160 251 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 ANXA2RQ3ZCQ2 193 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 PRR9Q5T870 116 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 PRNTQ86SH4 94 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 EIF4E3Q8N5X7 224 aaKnown RBP15.75■□□□□ 0.11
CLN3-234ENST00000568472 RNASE8Q8TDE3 154 aaKnown RBP15.75■□□□□ 0.11
CLN3-234ENST00000568472 TVP23CQ96ET8 276 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 SGK494Q96LW2 274 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 DKK2Q9UBU2 259 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 ZFP30Q9Y2G7 519 aa15.75■□□□□ 0.11
CLN3-234ENST00000568472 TRAV21A0A0B4J279 112 aa15.74■□□□□ 0.11
CLN3-234ENST00000568472 TRBV6-1A0A0K0K1D8 114 aa15.74■□□□□ 0.11
CLN3-234ENST00000568472 LYRM9A8MSI8 78 aa15.74■□□□□ 0.11
CLN3-234ENST00000568472 SMUG1Q53HV7 270 aa15.74■□□□□ 0.11
CLN3-234ENST00000568472 CASC10Q5T4H9 136 aa15.74■□□□□ 0.11
CLN3-234ENST00000568472 ZNF680Q8NEM1 530 aa15.74■□□□□ 0.11
CLN3-234ENST00000568472 LINC00479Q96M42 142 aa15.74■□□□□ 0.11
CLN3-234ENST00000568472 TIMM8BQ9Y5J9 83 aaPredicted RBP15.74■□□□□ 0.11
CLN3-234ENST00000568472 IGHV1OR15-1A0A075B7D0 117 aa15.73■□□□□ 0.11
CLN3-234ENST00000568472 NANOS2P60321 138 aaKnown RBP15.73■□□□□ 0.11
CLN3-234ENST00000568472 UBE2G1P62253 170 aa15.73■□□□□ 0.11
CLN3-234ENST00000568472 DNAH7Q8WXX0 4024 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 TRAV34A0A0B4J273 112 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 NUPR2A6NF83 97 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 CBY3A6NI87 242 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 PRM2P04554 102 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 AKR1C3P42330 323 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 TMEM183BQ1AE95 376 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 FAM222AQ5U5X8 452 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 LYPD6BQ8NI32 183 aa15.72■□□□□ 0.11
CLN3-234ENST00000568472 PLAC8L1A1L4L8 177 aa15.71■□□□□ 0.11
CLN3-234ENST00000568472 PDE6DO43924 150 aa15.71■□□□□ 0.11
CLN3-234ENST00000568472 MEF2BQ02080 365 aaPredicted RBP15.71■□□□□ 0.11
CLN3-234ENST00000568472 ZFAND6Q6FIF0 208 aa15.71■□□□□ 0.11
CLN3-234ENST00000568472 TEX261Q6UWH6 196 aa15.71■□□□□ 0.11
CLN3-234ENST00000568472 FAM159AQ6UWV7 190 aa15.71■□□□□ 0.11
CLN3-234ENST00000568472 PHLDA1Q8WV24 401 aaPredicted RBP15.71■□□□□ 0.11
CLN3-234ENST00000568472 VAX2Q9UIW0 290 aa15.71■□□□□ 0.11
CLN3-234ENST00000568472 CELA1Q9UNI1 258 aa15.71■□□□□ 0.11
CLN3-234ENST00000568472 SNURFLB1AK76 121 aa15.7■□□□□ 0.1
CLN3-234ENST00000568472 BCL2P10415 239 aa15.7■□□□□ 0.1
CLN3-234ENST00000568472 C12orf74Q32Q52 190 aa15.7■□□□□ 0.1
CLN3-234ENST00000568472 TDRG1Q3Y452 100 aa15.7■□□□□ 0.1
CLN3-234ENST00000568472 IBA57Q5T440 356 aaKnown RBP15.7■□□□□ 0.1
CLN3-234ENST00000568472 CEMP1Q6PRD7 247 aaPredicted RBP15.7■□□□□ 0.1
CLN3-234ENST00000568472 COX8CQ7Z4L0 72 aa15.7■□□□□ 0.1
CLN3-234ENST00000568472 Q86TA4 180 aa15.7■□□□□ 0.1
CLN3-234ENST00000568472 C2CD4CQ8TF44 421 aa15.7■□□□□ 0.1
CLN3-234ENST00000568472 GCGP01275 180 aa15.69■□□□□ 0.1
CLN3-234ENST00000568472 PFN1P07737 140 aaKnown RBP15.69■□□□□ 0.1
CLN3-234ENST00000568472 DAZ2Q13117 558 aaKnown RBP15.69■□□□□ 0.1
CLN3-234ENST00000568472 C11orf52Q96A22 123 aa15.69■□□□□ 0.1
CLN3-234ENST00000568472 KCNS1Q96KK3 526 aa15.69■□□□□ 0.1
CLN3-234ENST00000568472 KLK5Q9Y337 293 aaPredicted RBP15.69■□□□□ 0.1
CLN3-234ENST00000568472 SCO2A0A1W2PP80 73 aa15.68■□□□□ 0.1
CLN3-234ENST00000568472 LTAP01374 205 aa15.68■□□□□ 0.1
CLN3-234ENST00000568472 C8orf49Q96NF6 230 aa15.68■□□□□ 0.1
CLN3-234ENST00000568472 TRGV11A0A075B6L2 103 aa15.67■□□□□ 0.1
CLN3-234ENST00000568472 TRAV10A0A0B4J240 114 aa15.67■□□□□ 0.1
CLN3-234ENST00000568472 DAD1P61803 113 aa15.67■□□□□ 0.1
CLN3-234ENST00000568472 Q6ZQT7 251 aa15.67■□□□□ 0.1
CLN3-234ENST00000568472 Q6ZTC4 211 aa15.67■□□□□ 0.1
CLN3-234ENST00000568472 NOP10Q9NPE3 64 aaKnown RBP15.67■□□□□ 0.1
CLN3-234ENST00000568472 FABP5P3A8MUU1 101 aa15.66■□□□□ 0.1
CLN3-234ENST00000568472 MUC21Q5SSG8 566 aa15.66■□□□□ 0.1
CLN3-234ENST00000568472 C11orf72Q8NBR9 251 aa15.66■□□□□ 0.1
CLN3-234ENST00000568472 ZNF80P51504 273 aaPredicted RBP15.65■□□□□ 0.1
CLN3-234ENST00000568472 ZNF415Q09FC8 603 aa15.65■□□□□ 0.1
CLN3-234ENST00000568472 TMEM183AQ8IXX5 376 aa15.65■□□□□ 0.1
CLN3-234ENST00000568472 SDF2L1Q9HCN8 221 aa15.65■□□□□ 0.1
CLN3-234ENST00000568472 GSN-AS1Q9NRJ2 163 aa15.65■□□□□ 0.1
CLN3-234ENST00000568472 TP53TG3Q9ULZ0 132 aa15.65■□□□□ 0.1
CLN3-234ENST00000568472 TCL1AP56279 114 aa15.64■□□□□ 0.09
CLN3-234ENST00000568472 NAGKQ9UJ70 344 aa15.64■□□□□ 0.09
CLN3-234ENST00000568472 RBFOX3A6NFN3 312 aa15.63■□□□□ 0.09
CLN3-234ENST00000568472 DEFB130BP0DP73 79 aa15.63■□□□□ 0.09
CLN3-234ENST00000568472 DEFB130AP0DP74 79 aa15.63■□□□□ 0.09
CLN3-234ENST00000568472 RPL35P42766 123 aaKnown RBP15.63■□□□□ 0.09
CLN3-234ENST00000568472 BAGE2Q86Y30 109 aa15.63■□□□□ 0.09
CLN3-234ENST00000568472 DEFB131BA0A096LNP1 70 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms