RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GAGE12IP0CL82 117 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 GNG5P63218 68 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 DAZ2Q13117 558 aaKnown RBP10.56□□□□□ -0.72
VPS39-210ENST00000568357 ZNF726P1Q15940 193 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 ANXA2RQ3ZCQ2 193 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 FAM74A1Q5RGS3 127 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 CMTM2Q8TAZ6 248 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 RPH3ALQ9UNE2 315 aa10.56□□□□□ -0.72
VPS39-210ENST00000568357 IGHV1OR15-1A0A075B7D0 117 aa10.55□□□□□ -0.72
VPS39-210ENST00000568357 TAAR5O14804 337 aa10.55□□□□□ -0.72
VPS39-210ENST00000568357 Q6ZTI0 123 aa10.55□□□□□ -0.72
VPS39-210ENST00000568357 GOLT1AQ6ZVE7 132 aa10.55□□□□□ -0.72
VPS39-210ENST00000568357 ARL6IP6Q8N6S5 226 aa10.55□□□□□ -0.72
VPS39-210ENST00000568357 OR11H4Q8NGC9 324 aa10.55□□□□□ -0.72
VPS39-210ENST00000568357 TVP23CQ96ET8 276 aa10.55□□□□□ -0.72
VPS39-210ENST00000568357 KLF12Q9Y4X4 402 aa10.55□□□□□ -0.72
VPS39-210ENST00000568357 TRAV8-1A0A0A6YYK1 113 aa10.54□□□□□ -0.72
VPS39-210ENST00000568357 RGS13O14921 159 aa10.54□□□□□ -0.72
VPS39-210ENST00000568357 CXorf1O96002 111 aa10.54□□□□□ -0.72
VPS39-210ENST00000568357 ZNF680Q8NEM1 530 aa10.54□□□□□ -0.72
VPS39-210ENST00000568357 TMED6Q8WW62 240 aa10.54□□□□□ -0.72
VPS39-210ENST00000568357 ST6GAL2Q96JF0 529 aa10.54□□□□□ -0.72
VPS39-210ENST00000568357 LENEPQ9Y5L5 61 aa10.54□□□□□ -0.72
VPS39-210ENST00000568357 DYNC1H1Q14204 4646 aaKnown RBP10.53□□□□□ -0.72
VPS39-210ENST00000568357 HOXA5P20719 270 aa10.53□□□□□ -0.72
VPS39-210ENST00000568357 SUMO1P63165 101 aaKnown RBP10.53□□□□□ -0.72
VPS39-210ENST00000568357 MUC21Q5SSG8 566 aa10.53□□□□□ -0.72
VPS39-210ENST00000568357 Q6AWC8 147 aa10.53□□□□□ -0.72
VPS39-210ENST00000568357 KCNRGQ8N5I3 272 aa10.53□□□□□ -0.72
VPS39-210ENST00000568357 SGK494Q96LW2 274 aa10.53□□□□□ -0.72
VPS39-210ENST00000568357 TMEM167BQ9NRX6 74 aa10.53□□□□□ -0.72
VPS39-210ENST00000568357 DNAH6Q9C0G6 4158 aa10.53□□□□□ -0.72
VPS39-210ENST00000568357 TCRAP04437 139 aa10.52□□□□□ -0.73
VPS39-210ENST00000568357 TCL1AP56279 114 aa10.52□□□□□ -0.73
VPS39-210ENST00000568357 OR5I1Q13606 314 aa10.52□□□□□ -0.73
VPS39-210ENST00000568357 C15orf53Q8NAA6 179 aa10.52□□□□□ -0.73
VPS39-210ENST00000568357 TMPRSS5Q9H3S3 457 aa10.52□□□□□ -0.73
VPS39-210ENST00000568357 TRGV1A0A0A0MS02 117 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 CTXND1A0A1B0GTU2 59 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 HMSDA8MTL9 139 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 GGTLC3B5MD39 225 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 SPINK4O60575 86 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 NUDT3O95989 172 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 ZNF345Q14585 488 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 RNF212Q495C1 297 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 AKR1C8PQ5T2L2 129 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 IBA57Q5T440 356 aaKnown RBP10.51□□□□□ -0.73
VPS39-210ENST00000568357 IQCF2Q8IXL9 164 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 C5orf17Q8NAS9 161 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 ARPC5LQ9BPX5 153 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 MDFICQ9P1T7 246 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 EPDR1Q9UM22 224 aa10.51□□□□□ -0.73
VPS39-210ENST00000568357 TRAV26-1A0A087WT03 109 aa10.5□□□□□ -0.73
VPS39-210ENST00000568357 IGLV2-11P01706 119 aa10.5□□□□□ -0.73
VPS39-210ENST00000568357 FGF8P55075 233 aaPredicted RBP10.5□□□□□ -0.73
VPS39-210ENST00000568357 UBE2DNLQ8IWF7 75 aa10.5□□□□□ -0.73
VPS39-210ENST00000568357 C18orf15Q96N68 181 aa10.5□□□□□ -0.73
VPS39-210ENST00000568357 TREM1Q9NP99 234 aa10.5□□□□□ -0.73
VPS39-210ENST00000568357 TRGV2A0A075B6R0 118 aa10.49□□□□□ -0.73
VPS39-210ENST00000568357 A0A1W2PRE2 83 aa10.49□□□□□ -0.73
VPS39-210ENST00000568357 F6UZH7 168 aa10.49□□□□□ -0.73
VPS39-210ENST00000568357 M0R2N4 97 aa10.49□□□□□ -0.73
VPS39-210ENST00000568357 BOLA1Q9Y3E2 137 aa10.49□□□□□ -0.73
VPS39-210ENST00000568357 FAT2Q9NYQ8 4349 aa10.49□□□□□ -0.73
VPS39-210ENST00000568357 PKHD1P08F94 4074 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 A0A0D9SG52 128 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 A0A0J9YY99 117 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 SERTM2A0A1B0GWG4 89 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 GNRH2O43555 120 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 FHITP49789 147 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 UBE2G2P60604 165 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 TMEM183BQ1AE95 376 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 TDRG1Q3Y452 100 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 FAM159AQ6UWV7 190 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 TMEM183AQ8IXX5 376 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 LINC00479Q96M42 142 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 C8orf49Q96NF6 230 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 MRPL16Q9NX20 251 aaKnown RBP10.48□□□□□ -0.73
VPS39-210ENST00000568357 PSG8Q9UQ74 426 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 DNAH11Q96DT5 4516 aa10.48□□□□□ -0.73
VPS39-210ENST00000568357 DNAH2Q9P225 4427 aa10.47□□□□□ -0.73
VPS39-210ENST00000568357 IGLV2-18A0A075B6J9 118 aa10.47□□□□□ -0.73
VPS39-210ENST00000568357 ZNF80P51504 273 aaPredicted RBP10.47□□□□□ -0.73
VPS39-210ENST00000568357 ZNF415Q09FC8 603 aa10.47□□□□□ -0.73
VPS39-210ENST00000568357 LGALS9BQ3B8N2 356 aa10.47□□□□□ -0.73
VPS39-210ENST00000568357 KRTAP4-5Q9BYR2 181 aa10.47□□□□□ -0.73
VPS39-210ENST00000568357 NAGKQ9UJ70 344 aa10.47□□□□□ -0.73
VPS39-210ENST00000568357 MUC4Q99102 2169 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 TRAV21A0A0B4J279 112 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 MAP1LC3B2A6NCE7 125 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 FAM74A7A6NL05 159 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 K7EQM0 130 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 BCL2L11O43521 198 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 FLI1Q01543 452 aaPredicted RBP10.46□□□□□ -0.73
VPS39-210ENST00000568357 PRNTQ86SH4 94 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 CYB561D1Q8N8Q1 229 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 VSIG2Q96IQ7 327 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 ATG101Q9BSB4 218 aa10.46□□□□□ -0.73
VPS39-210ENST00000568357 ZNF471Q9BX82 626 aaPredicted RBP10.46□□□□□ -0.73
VPS39-210ENST00000568357 MAP1LC3BQ9GZQ8 125 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms