RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TMPRSS5Q9H3S3 457 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 TNFSF18Q9UNG2 199 aa10.96□□□□□ -0.65
VPS39-203ENST00000561797 TRGV2A0A075B6R0 118 aa10.95□□□□□ -0.66
VPS39-203ENST00000561797 TRAV26-1A0A087WT03 109 aa10.95□□□□□ -0.66
VPS39-203ENST00000561797 STAG3L2P0CL84 134 aa10.95□□□□□ -0.66
VPS39-203ENST00000561797 STAG3L3P0CL85 134 aa10.95□□□□□ -0.66
VPS39-203ENST00000561797 TCL1AP56279 114 aa10.95□□□□□ -0.66
VPS39-203ENST00000561797 GNG5P63218 68 aa10.95□□□□□ -0.66
VPS39-203ENST00000561797 SERF2P84101 59 aa10.95□□□□□ -0.66
VPS39-203ENST00000561797 GOLT1AQ6ZVE7 132 aa10.95□□□□□ -0.66
VPS39-203ENST00000561797 GNPNAT1Q96EK6 184 aaPredicted RBP10.95□□□□□ -0.66
VPS39-203ENST00000561797 BORCS7-ASMTA0A0B4J1R7 106 aa10.94□□□□□ -0.66
VPS39-203ENST00000561797 MBP02144 154 aa10.94□□□□□ -0.66
VPS39-203ENST00000561797 LGALS9BQ3B8N2 356 aa10.94□□□□□ -0.66
VPS39-203ENST00000561797 MUC4Q99102 2169 aa10.94□□□□□ -0.66
VPS39-203ENST00000561797 BIRC6Q9NR09 4857 aa10.93□□□□□ -0.66
VPS39-203ENST00000561797 GCHFRP30047 84 aa10.93□□□□□ -0.66
VPS39-203ENST00000561797 CCL18P55774 89 aa10.93□□□□□ -0.66
VPS39-203ENST00000561797 IBA57Q5T440 356 aaKnown RBP10.93□□□□□ -0.66
VPS39-203ENST00000561797 ACTR3CQ9C0K3 210 aaPredicted RBP10.93□□□□□ -0.66
VPS39-203ENST00000561797 MRPL16Q9NX20 251 aaKnown RBP10.93□□□□□ -0.66
VPS39-203ENST00000561797 LENEPQ9Y5L5 61 aa10.93□□□□□ -0.66
VPS39-203ENST00000561797 TRAV8-1A0A0A6YYK1 113 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 G3V3Q6 166 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 SPINK4O60575 86 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 ZNF415Q09FC8 603 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 Q6AWC8 147 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 Q6ZR54 194 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 LINC00336Q6ZUF6 198 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 SSX7Q7RTT5 188 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 IQCF2Q8IXL9 164 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 TMED6Q8WW62 240 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 SGK494Q96LW2 274 aa10.92□□□□□ -0.66
VPS39-203ENST00000561797 DNAH6Q9C0G6 4158 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 F6UZH7 168 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 RTL8CO15255 209 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 ARPC5O15511 151 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 CXorf1O96002 111 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 IGHV3-53P01767 116 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 FAM3BP58499 235 aaPredicted RBP10.91□□□□□ -0.66
VPS39-203ENST00000561797 TMEM183BQ1AE95 376 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 FAM159AQ6UWV7 190 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 TMEM183AQ8IXX5 376 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 ARL6IP6Q8N6S5 226 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 ST6GAL2Q96JF0 529 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 NAGKQ9UJ70 344 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 LINC00588Q9Y4M8 146 aa10.91□□□□□ -0.66
VPS39-203ENST00000561797 FRAS1Q86XX4 4008 aa10.9□□□□□ -0.66
VPS39-203ENST00000561797 SMLR1H3BR10 107 aa10.9□□□□□ -0.66
VPS39-203ENST00000561797 SUMO1P63165 101 aaKnown RBP10.9□□□□□ -0.66
VPS39-203ENST00000561797 SUN5Q8TC36 379 aa10.9□□□□□ -0.66
VPS39-203ENST00000561797 TVP23CQ96ET8 276 aa10.9□□□□□ -0.66
VPS39-203ENST00000561797 TREM1Q9NP99 234 aa10.9□□□□□ -0.66
VPS39-203ENST00000561797 MDFICQ9P1T7 246 aa10.9□□□□□ -0.66
VPS39-203ENST00000561797 PRSS29PA6NIE9 313 aa10.89□□□□□ -0.67
VPS39-203ENST00000561797 C5orf17Q8NAS9 161 aa10.89□□□□□ -0.67
VPS39-203ENST00000561797 ZNRF2Q8NHG8 242 aa10.89□□□□□ -0.67
VPS39-203ENST00000561797 VSIG2Q96IQ7 327 aa10.89□□□□□ -0.67
VPS39-203ENST00000561797 C18orf15Q96N68 181 aa10.89□□□□□ -0.67
VPS39-203ENST00000561797 TMEM167BQ9NRX6 74 aa10.89□□□□□ -0.67
VPS39-203ENST00000561797 TRGV11A0A075B6L2 103 aa10.88□□□□□ -0.67
VPS39-203ENST00000561797 H3BNG1 76 aa10.88□□□□□ -0.67
VPS39-203ENST00000561797 GNRH2O43555 120 aa10.88□□□□□ -0.67
VPS39-203ENST00000561797 TCRAP04437 139 aa10.88□□□□□ -0.67
VPS39-203ENST00000561797 ZNF726P1Q15940 193 aa10.88□□□□□ -0.67
VPS39-203ENST00000561797 DNAH10Q8IVF4 4471 aa10.88□□□□□ -0.67
VPS39-203ENST00000561797 TRAV21A0A0B4J279 112 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 CTXND1A0A1B0GTU2 59 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 GGTLC3B5MD39 225 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 K7EQM0 130 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 TAAR5O14804 337 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 ESRGQ1W209 222 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 AKR1C8PQ5T2L2 129 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 C1orf134Q5TEV5 83 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 C8orf49Q96NF6 230 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 NDFIP1Q9BT67 221 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 CYTL1Q9NRR1 136 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 EPDR1Q9UM22 224 aa10.87□□□□□ -0.67
VPS39-203ENST00000561797 NBDYA0A0U1RRE5 68 aa10.86□□□□□ -0.67
VPS39-203ENST00000561797 SERTM2A0A1B0GWG4 89 aa10.86□□□□□ -0.67
VPS39-203ENST00000561797 PAX4O43316 350 aa10.86□□□□□ -0.67
VPS39-203ENST00000561797 FGF8P55075 233 aaPredicted RBP10.86□□□□□ -0.67
VPS39-203ENST00000561797 UBE2G2P60604 165 aa10.86□□□□□ -0.67
VPS39-203ENST00000561797 SOHLH1Q5JUK2 328 aa10.86□□□□□ -0.67
VPS39-203ENST00000561797 SPXQ9BT56 116 aa10.86□□□□□ -0.67
VPS39-203ENST00000561797 PSG8Q9UQ74 426 aa10.86□□□□□ -0.67
VPS39-203ENST00000561797 A0A096LPF7 62 aa10.85□□□□□ -0.67
VPS39-203ENST00000561797 TDRG1Q3Y452 100 aa10.85□□□□□ -0.67
VPS39-203ENST00000561797 PRNTQ86SH4 94 aa10.85□□□□□ -0.67
VPS39-203ENST00000561797 Q9H8V8 135 aa10.85□□□□□ -0.67
VPS39-203ENST00000561797 TRGV4A0A0C4DH28 118 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 A0A1B0GVY2 172 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 A0A1W2PRE2 83 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 IGLV2-11P01706 119 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 TYMSP04818 313 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 SFTA3P0C7M3 94 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 ZNF80P51504 273 aaPredicted RBP10.84□□□□□ -0.67
VPS39-203ENST00000561797 FLI1Q01543 452 aaPredicted RBP10.84□□□□□ -0.67
VPS39-203ENST00000561797 FHL2Q14192 279 aa10.84□□□□□ -0.67
VPS39-203ENST00000561797 CYB561D1Q8N8Q1 229 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms