RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 C5orf17Q8NAS9 161 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 Q8TAT8 98 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 STOML3Q8TAV4 291 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 ZNF503Q96F45 646 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 ST6GAL2Q96JF0 529 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 FAM19A4Q96LR4 140 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 VGLL1Q99990 258 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 LINC00467Q9BRT7 94 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 NKX6-2Q9C056 277 aaPredicted RBP3.11□□□□□ -1.91
SNX1-205ENST00000559339 SH3BGRL3Q9H299 93 aa3.11□□□□□ -1.91
SNX1-205ENST00000559339 DNAH7Q8WXX0 4024 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 TRGV11A0A075B6L2 103 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 IGHV1OR15-1A0A075B7D0 117 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 TRAV21A0A0B4J279 112 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 CTXND1A0A1B0GTU2 59 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 KANTRA0A1W2PQU2 76 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 A0A1W2PRE2 83 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 GAGE12BA1L429 117 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 PLAC8L1A1L4L8 177 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 UMAD1C9J7I0 102 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 F6UZH7 168 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 SMLR1H3BR10 107 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 PFDN1O60925 122 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 GAGE7O76087 117 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 IFNA7P01567 189 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 GAGE12FP0CL80 117 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 GAGE12GP0CL81 117 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 GAGE12IP0CL82 117 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 GCHFRP30047 84 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 PPT1P50897 306 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 CCL18P55774 89 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 SUMO1P63165 101 aaKnown RBP3.1□□□□□ -1.91
SNX1-205ENST00000559339 CD300CQ08708 224 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 OR5I1Q13606 314 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 LGALS9BQ3B8N2 356 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 SAPCD1Q5SSQ6 148 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 Q6AWC8 147 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 EIF5AL1Q6IS14 154 aaKnown RBP3.1□□□□□ -1.91
SNX1-205ENST00000559339 TMEM88Q6PEY1 159 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 GOLT1AQ6ZVE7 132 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 ZFAND2AQ8N6M9 145 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 POM121L12Q8N7R1 296 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 ATG101Q9BSB4 218 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 TREM1Q9NP99 234 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 GSN-AS1Q9NRJ2 163 aa3.1□□□□□ -1.91
SNX1-205ENST00000559339 KMT2CQ8NEZ4 4911 aaKnown RBP3.1□□□□□ -1.91
SNX1-205ENST00000559339 TRGV1A0A0A0MS02 117 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 TEX46H3BTG2 121 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 EIF3GO75821 320 aaKnown RBP eCLIP3.09□□□□□ -1.91
SNX1-205ENST00000559339 NUDT3O95989 172 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 TCRAP04437 139 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 SEC11BP0C7V7 166 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 TPT1P13693 172 aaKnown RBP3.09□□□□□ -1.91
SNX1-205ENST00000559339 TCL1AP56279 114 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 FAM3BP58499 235 aaPredicted RBP3.09□□□□□ -1.91
SNX1-205ENST00000559339 GNG5P63218 68 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 ZNF415Q09FC8 603 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 SLAQ13239 276 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 RNF212Q495C1 297 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 MUC21Q5SSG8 566 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 DPPA3Q6W0C5 159 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 KCNRGQ8N5I3 272 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 CYB561D1Q8N8Q1 229 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 C11orf72Q8NBR9 251 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 SUN5Q8TC36 379 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 SFT2D1Q8WV19 159 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 HIST1H2BAQ96A08 127 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 KCNS1Q96KK3 526 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 C18orf15Q96N68 181 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 TCEAL7Q9BRU2 100 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 ZNF471Q9BX82 626 aaPredicted RBP3.09□□□□□ -1.91
SNX1-205ENST00000559339 SDF2L1Q9HCN8 221 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 NAGKQ9UJ70 344 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 EPDR1Q9UM22 224 aa3.09□□□□□ -1.91
SNX1-205ENST00000559339 TRAV26-1A0A087WT03 109 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 TRAV8-1A0A0A6YYK1 113 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 MAP1LC3B2A6NCE7 125 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 GGTLC3B5MD39 225 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 G3V3Q6 166 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 H3BNG1 76 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 BCL2L11O43521 198 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 SPINK4O60575 86 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 PFN1P07737 140 aaKnown RBP3.08□□□□□ -1.92
SNX1-205ENST00000559339 H2AFB1P0C5Y9 115 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 RAB5CP51148 216 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 FGF8P55075 233 aaPredicted RBP3.08□□□□□ -1.92
SNX1-205ENST00000559339 UBE2G2P60604 165 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 UBE2G1P62253 170 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 FLI1Q01543 452 aaPredicted RBP3.08□□□□□ -1.92
SNX1-205ENST00000559339 TMEM183BQ1AE95 376 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 TDRG1Q3Y452 100 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 LGALSLQ3ZCW2 172 aaPredicted RBP3.08□□□□□ -1.92
SNX1-205ENST00000559339 SMUG1Q53HV7 270 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 SOHLH1Q5JUK2 328 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 PRR9Q5T870 116 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 CST9LP1Q5W188 147 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 Q6ZTI0 123 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 SSX7Q7RTT5 188 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 PRNTQ86SH4 94 aa3.08□□□□□ -1.92
SNX1-205ENST00000559339 TMEM183AQ8IXX5 376 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 122 ms