RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CASC2Q6XLA1 102 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 PLPP5Q8NEB5 264 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 OR10AC1Q8NH08 325 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 LPAR5Q9H1C0 372 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 COMMD3Q9UBI1 195 aa0.4□□□□□ -2.35
USP3-209ENST00000558925 DSPPQ9NZW4 1301 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 OVOS2A0A0G2JMS6 1433 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 FGD6Q6ZV73 1430 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 TEP1Q99973 2627 aaKnown RBP0.39□□□□□ -2.35
USP3-209ENST00000558925 ZCCHC11Q5TAX3 1644 aaKnown RBP0.39□□□□□ -2.35
USP3-209ENST00000558925 PEAK1Q9H792 1746 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 SRCAPQ6ZRS2 3230 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.39□□□□□ -2.35
USP3-209ENST00000558925 NUPR2A6NF83 97 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 ARL5CA6NH57 179 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 C9JAW5 83 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 ARPC5O15511 151 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 DPM2O94777 84 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 TFF1P04155 84 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 PAEPP09466 180 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 SAA1P0DJI8 122 aaPredicted RBP0.39□□□□□ -2.35
USP3-209ENST00000558925 PRB4P10163 310 aaPredicted RBP0.39□□□□□ -2.35
USP3-209ENST00000558925 CCL4P13236 92 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 GTF2A1P52655 376 aaPredicted RBP0.39□□□□□ -2.35
USP3-209ENST00000558925 QRFPP83859 136 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 SPATA45Q537H7 98 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 OR8I2Q8N0Y5 310 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 OR5A2Q8NGI9 324 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 OTOSQ8NHW6 89 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 PYDC1Q8WXC3 89 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 CIB3Q96Q77 187 aaPredicted RBP0.39□□□□□ -2.35
USP3-209ENST00000558925 C19orf12Q9NSK7 152 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 JPT1Q9UK76 154 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 HIGD1AQ9Y241 93 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 ABCA2Q9BZC7 2435 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 JMJD1CQ15652 2540 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 ZNF462Q96JM2 2506 aa0.39□□□□□ -2.35
USP3-209ENST00000558925 ERBINQ96RT1 1412 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 NCOR2Q9Y618 2525 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 MAST4O15021 2626 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 NOTCH1P46531 2555 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 CDK5RAP2Q96SN8 1893 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 USP54Q70EL1 1684 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 CTTNBP2Q8WZ74 1663 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 MED23Q9ULK4 1368 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 A0A0J9YY99 117 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 LOC107986453A0A1B0GWG9 222 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 A0A1B0GX51 115 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 ZNF727A8MUV8 499 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 UQCRQO14949 82 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 EDF1O60869 148 aaKnown RBP0.38□□□□□ -2.35
USP3-209ENST00000558925 IGKCP01834 107 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 IL7P13232 177 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 PDE6GP18545 87 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 PCBD1P61457 104 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 SNRPD3P62318 126 aaKnown RBP0.38□□□□□ -2.35
USP3-209ENST00000558925 HSD17B12Q53GQ0 312 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 Q86TA4 180 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 BATF3Q9NR55 127 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 CALML5Q9NZT1 146 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 MPC1Q9Y5U8 109 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 KIAA1549LQ6ZVL6 1849 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 SIPA1L2Q9P2F8 1722 aaPredicted RBP0.38□□□□□ -2.35
USP3-209ENST00000558925 ABCA12Q86UK0 2595 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 NAV2Q8IVL1 2488 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 ABCA4P78363 2273 aa0.38□□□□□ -2.35
USP3-209ENST00000558925 FLNBO75369 2602 aaKnown RBP0.37□□□□□ -2.35
USP3-209ENST00000558925 ANKHD1Q8IWZ3 2542 aaKnown RBP0.37□□□□□ -2.35
USP3-209ENST00000558925 ARHGEF10O15013 1369 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 ATG2AQ2TAZ0 1938 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 DOPEY1Q5JWR5 2465 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 MYH13Q9UKX3 1938 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 NAV3Q8IVL0 2385 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 IGHV1-24A0A0C4DH33 117 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 LOC101927531A0A1B0GV80 90 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 A0A1W2PPB8 328 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 A0A1W2PRS3 328 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 TMEM189A5PLL7 270 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 A6NN06 94 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 BBIP1A8MTZ0 92 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 KIR3DP1A8MWS1 328 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 OR2H2O95918 312 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 CD3DP04234 171 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 CKS2P33552 79 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 SRP9P49458 86 aaKnown RBP0.37□□□□□ -2.35
USP3-209ENST00000558925 CKS1BP61024 79 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 RPL37AP61513 92 aaKnown RBP0.37□□□□□ -2.35
USP3-209ENST00000558925 PSPHP78330 225 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 HIST1H1AQ02539 215 aaPredicted RBP0.37□□□□□ -2.35
USP3-209ENST00000558925 IQCJQ1A5X6 159 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 IZUMO2Q6UXV1 221 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 TMEM91Q6ZNR0 172 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 C3orf62Q6ZUJ4 267 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 TCTE3Q8IZS6 198 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 TCTEX1D1Q8N7M0 179 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 AP1S3Q96PC3 154 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 AIF1LQ9BQI0 150 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 BANF2Q9H503 90 aa0.37□□□□□ -2.35
USP3-209ENST00000558925 MRPL36Q9P0J6 103 aaKnown RBP0.37□□□□□ -2.35
USP3-209ENST00000558925 BOKQ9UMX3 212 aaPredicted RBP0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms