RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 FAM106AQ4KMX7 169 aa8.13□□□□□ -1.11
CUX1-217ENST00000558836 TM4SF20Q53R12 229 aa8.13□□□□□ -1.11
CUX1-217ENST00000558836 DUX5Q96PT3 197 aa8.13□□□□□ -1.11
CUX1-217ENST00000558836 KLK9Q9UKQ9 250 aa8.13□□□□□ -1.11
CUX1-217ENST00000558836 MTORP42345 2549 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 IGHV1-24A0A0C4DH33 117 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 FAM223BA6NKX1 122 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 LINC00614P0C842 121 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 FAM223AQ8IWN6 122 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 C20orf173Q96LM9 149 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 NOTCH2Q04721 2471 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 KIR2DL5BA0A0G2JN68 375 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 KIR2DL5BA0A0G2JPC4 375 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 D6R8Y8 96 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 SPRY2O43597 315 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 KIR2DL5AQ8N109 375 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 NDFIP1Q9BT67 221 aa8.12□□□□□ -1.11
CUX1-217ENST00000558836 NPSP0C0P6 89 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 RAB9AP51151 201 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 SNHG12Q9BXW3 62 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 C11orf21Q9P2W6 132 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 A0A087X0K7 114 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 C2orf70A6NJV1 201 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 F6UB75 175 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 GAS8-AS1O95177 125 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 NCR2O95944 276 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 FOXE3Q13461 319 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 SPATA45Q537H7 98 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 LINC01356Q8N9X3 169 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 FER1L6-AS1Q8NA97 138 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 GLMPQ8WWB7 406 aa8.11□□□□□ -1.11
CUX1-217ENST00000558836 FABP5P3A8MUU1 101 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 S100A7P31151 101 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 HIST2H2BCQ6DN03 193 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 PMCHL2Q9BQD1 86 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 SLC50A1Q9BRV3 221 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 TMEM208Q9BTX3 173 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 U3KQE9 123 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 AKAP9Q99996 3911 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 IFI27P40305 119 aaPredicted RBP8.1□□□□□ -1.11
CUX1-217ENST00000558836 LOXL1Q08397 574 aaPredicted RBP8.1□□□□□ -1.11
CUX1-217ENST00000558836 TMEM78Q5T7P6 136 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 GPHB5Q86YW7 130 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 ZNF738Q8NE65 137 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 TP73-AS1Q9UF72 201 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 WNK1Q9H4A3 2382 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 A0A096LNT2 108 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 IGKV3D-20A0A0C4DH25 116 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 TMEM238C9JI98 176 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 DLEU1O43261 78 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 HIST2H2BDQ6DRA6 164 aa8.1□□□□□ -1.11
CUX1-217ENST00000558836 NIPBLQ6KC79 2804 aaeCLIP8.09□□□□□ -1.11
CUX1-217ENST00000558836 LEPROTL1O95214 131 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 CRIP2P52943 208 aaPredicted RBP8.09□□□□□ -1.11
CUX1-217ENST00000558836 RBX1P62877 108 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 WFDC3Q8IUB2 231 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 PRSS3P2Q8NHM4 247 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 NPFFR1Q9GZQ6 430 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 BEX4Q9NWD9 120 aaPredicted RBP8.09□□□□□ -1.11
CUX1-217ENST00000558836 AGRNO00468 2067 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 SLC25A16P16260 332 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 KIR3DS1Q14943 382 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 BATFQ16520 125 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 PRR9Q5T870 116 aa8.09□□□□□ -1.11
CUX1-217ENST00000558836 CR1P17927 2039 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 M0R143 59 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 MRPL51Q4U2R6 128 aaKnown RBP8.08□□□□□ -1.12
CUX1-217ENST00000558836 DMRTA1Q5VZB9 504 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 FAM104BQ5XKR9 115 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 RHPN1-AS1Q9BWJ2 59 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 M0QZK8 103 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 NDUFA4O00483 81 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 IGLV1-40P01703 118 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 DSCR9P59020 149 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 Q6AWC8 147 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 COX8CQ7Z4L0 72 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 USMG5Q96IX5 58 aa8.08□□□□□ -1.12
CUX1-217ENST00000558836 IGLC6P0CF74 106 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 TFPI2P48307 235 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 PRSS57Q6UWY2 283 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 PRELID3AQ96N28 172 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 C20orf144Q9BQM9 153 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 MIEN1Q9BRT3 115 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 GATA1P15976 413 aaPredicted RBP8.07□□□□□ -1.12
CUX1-217ENST00000558836 CKS2P33552 79 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 CHCHD1Q96BP2 118 aaKnown RBP8.07□□□□□ -1.12
CUX1-217ENST00000558836 TMEM70Q9BUB7 260 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 AP5S1Q9NUS5 200 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 NOTCH3Q9UM47 2321 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 RPLP1P05386 114 aaKnown RBP8.07□□□□□ -1.12
CUX1-217ENST00000558836 EVI2AP22794 236 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 CTRLP40313 264 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 ZNF493Q6ZR52 646 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 OR10AG1Q8NH19 301 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 SIGLEC8Q9NYZ4 499 aa8.07□□□□□ -1.12
CUX1-217ENST00000558836 GATA3P23771 443 aa8.06□□□□□ -1.12
CUX1-217ENST00000558836 HIST1H1AQ02539 215 aaPredicted RBP8.06□□□□□ -1.12
CUX1-217ENST00000558836 FA2HQ7L5A8 372 aa8.06□□□□□ -1.12
CUX1-217ENST00000558836 TMEM190Q8WZ59 177 aa8.06□□□□□ -1.12
CUX1-217ENST00000558836 NPYP01303 97 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms