RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 GOSR1O95249 250 aa12.59□□□□□ -0.39
SHMT2-232ENST00000557487 VMO1Q7Z5L0 202 aa12.59□□□□□ -0.39
SHMT2-232ENST00000557487 MYOZ3Q8TDC0 251 aa12.59□□□□□ -0.39
SHMT2-232ENST00000557487 TMEM158Q8WZ71 300 aa12.59□□□□□ -0.39
SHMT2-232ENST00000557487 BOD1L1Q8NFC6 3051 aa12.59□□□□□ -0.39
SHMT2-232ENST00000557487 ZNF462Q96JM2 2506 aa12.59□□□□□ -0.39
SHMT2-232ENST00000557487 BUB3O43684 328 aa12.58□□□□□ -0.39
SHMT2-232ENST00000557487 PRB4P10163 310 aaPredicted RBP12.58□□□□□ -0.39
SHMT2-232ENST00000557487 ZNF502Q8TBZ5 544 aa12.58□□□□□ -0.39
SHMT2-232ENST00000557487 FOXC2Q99958 501 aa12.58□□□□□ -0.39
SHMT2-232ENST00000557487 TRBV25-1A0A075B6N4 114 aa12.58□□□□□ -0.4
SHMT2-232ENST00000557487 TMEM11P17152 192 aa12.58□□□□□ -0.4
SHMT2-232ENST00000557487 LAGE3Q14657 143 aa12.58□□□□□ -0.4
SHMT2-232ENST00000557487 CEND1Q8N111 149 aa12.58□□□□□ -0.4
SHMT2-232ENST00000557487 IGKV2D-26A0A0A0MRZ7 120 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 IGHV7-81A0A0B4J1V7 117 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 LINC01619G3V211 115 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 PLNP26678 52 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 FXYD2P54710 66 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 KLRD1Q13241 179 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 WFDC3Q8IUB2 231 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 ZFAND3Q9H8U3 227 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 ROS1P08922 2347 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 PKDREJQ9NTG1 2253 aa12.57□□□□□ -0.4
SHMT2-232ENST00000557487 IGHV3-23P01764 117 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 HLA-DMBP28068 263 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 ZC2HC1BQ5TFG8 222 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 PHLDA1Q8WV24 401 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-232ENST00000557487 A0A087WX48 190 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 TCTAP57738 103 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 ERCC8Q13216 396 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 TMEM78Q5T7P6 136 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 LINC01560Q8TB33 94 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 MRAP2Q96G30 205 aa12.56□□□□□ -0.4
SHMT2-232ENST00000557487 NAA38Q9BRA0 125 aaKnown RBP12.56□□□□□ -0.4
SHMT2-232ENST00000557487 TRAV12-1A0A0B4J245 112 aa12.55□□□□□ -0.4
SHMT2-232ENST00000557487 IGKV3D-20A0A0C4DH25 116 aa12.55□□□□□ -0.4
SHMT2-232ENST00000557487 A0A1W2PRD5 423 aa12.55□□□□□ -0.4
SHMT2-232ENST00000557487 A0A1W2PRF3 423 aa12.55□□□□□ -0.4
SHMT2-232ENST00000557487 A0A1W2PRM7 423 aa12.55□□□□□ -0.4
SHMT2-232ENST00000557487 K7EMI3 77 aa12.55□□□□□ -0.4
SHMT2-232ENST00000557487 GNLYP22749 145 aa12.55□□□□□ -0.4
SHMT2-232ENST00000557487 ATP6V0BQ99437 205 aa12.55□□□□□ -0.4
SHMT2-232ENST00000557487 E9PLD3 99 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 ZNF207O43670 478 aaKnown RBP12.54□□□□□ -0.4
SHMT2-232ENST00000557487 IGFL4Q6B9Z1 124 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 C9orf47Q6ZRZ4 202 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 GTSCR1Q86UQ5 136 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 NRACQ8N912 160 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 Q8N9W7 124 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 LENEPQ9Y5L5 61 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 RP1L1Q8IWN7 2480 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-232ENST00000557487 PRAC2D3DTV9 90 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 F8W1H4 67 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 RIPPLY3P57055 190 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 C15orf32Q32M92 178 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 AGPAT4-IT1Q9H0P7 198 aa12.54□□□□□ -0.4
SHMT2-232ENST00000557487 TMEM238C9JI98 176 aa12.53□□□□□ -0.4
SHMT2-232ENST00000557487 GAS8-AS1O95177 125 aa12.53□□□□□ -0.4
SHMT2-232ENST00000557487 SLC25A16P16260 332 aa12.53□□□□□ -0.4
SHMT2-232ENST00000557487 IGHV7-4-1A0A0J9YVY3 117 aa12.52□□□□□ -0.4
SHMT2-232ENST00000557487 J3QR89 54 aa12.52□□□□□ -0.4
SHMT2-232ENST00000557487 METTL26Q96S19 204 aa12.52□□□□□ -0.4
SHMT2-232ENST00000557487 MRPL35Q9NZE8 188 aaKnown RBP12.52□□□□□ -0.4
SHMT2-232ENST00000557487 TRBV7-1A0A0A6YYK4 115 aa12.52□□□□□ -0.41
SHMT2-232ENST00000557487 SCGB1A1P11684 91 aa12.52□□□□□ -0.41
SHMT2-232ENST00000557487 TM4SF20Q53R12 229 aa12.52□□□□□ -0.41
SHMT2-232ENST00000557487 EEF1AKMT3Q96AZ1 226 aa12.52□□□□□ -0.41
SHMT2-232ENST00000557487 TMEM160Q9NX00 188 aa12.52□□□□□ -0.41
SHMT2-232ENST00000557487 SPENQ96T58 3664 aaKnown RBP12.51□□□□□ -0.41
SHMT2-232ENST00000557487 TRAV40A0A0B4J280 105 aa12.51□□□□□ -0.41
SHMT2-232ENST00000557487 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-232ENST00000557487 CLEC3BP05452 202 aa12.51□□□□□ -0.41
SHMT2-232ENST00000557487 GATA1P15976 413 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-232ENST00000557487 ORMDL2Q53FV1 153 aa12.51□□□□□ -0.41
SHMT2-232ENST00000557487 FOXI2Q6ZQN5 318 aa12.51□□□□□ -0.41
SHMT2-232ENST00000557487 NHP2Q9NX24 153 aaKnown RBP12.51□□□□□ -0.41
SHMT2-232ENST00000557487 CLPSL1A2RUU4 121 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 H7C1H1 209 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 IGLL5B9A064 214 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 F8VRH5 84 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 PPIFP30405 207 aaKnown RBP12.5□□□□□ -0.41
SHMT2-232ENST00000557487 SPANXN1Q5VSR9 72 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 C11orf71Q6IPW1 123 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 RNF182Q8N6D2 247 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 C11orf21Q9P2W6 132 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 U3KQE9 123 aa12.5□□□□□ -0.41
SHMT2-232ENST00000557487 TRAV8-2A0A0B4J237 113 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 FAM90A27PA6NNH2 459 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 TRGV3P03979 118 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 C20orf78Q9BR46 151 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 SMIM2Q9BVW6 85 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 A0A1B0GWB2 263 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 RPL24P83731 157 aaKnown RBP12.49□□□□□ -0.41
SHMT2-232ENST00000557487 C12orf74Q32Q52 190 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 C8orf86Q6ZUL3 223 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 ZNF479Q96JC4 524 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 TTTY13Q9BZ97 58 aa12.49□□□□□ -0.41
SHMT2-232ENST00000557487 SIRPDQ9H106 197 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms