RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 METTL26Q96S19 204 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 VKORC1Q9BQB6 163 aa10.72□□□□□ -0.69
SHMT2-226ENST00000556825 IGKV1D-37A0A075B6S9 117 aa10.71□□□□□ -0.69
SHMT2-226ENST00000556825 A0A0G2JNJ9 132 aa10.71□□□□□ -0.69
SHMT2-226ENST00000556825 ATOX1O00244 68 aa10.71□□□□□ -0.69
SHMT2-226ENST00000556825 TCF15Q12870 199 aa10.71□□□□□ -0.69
SHMT2-226ENST00000556825 C3orf36Q3SXR2 165 aa10.71□□□□□ -0.69
SHMT2-226ENST00000556825 Q9UFV3 132 aa10.71□□□□□ -0.69
SHMT2-226ENST00000556825 RP1P56715 2156 aa10.71□□□□□ -0.7
SHMT2-226ENST00000556825 SDK1Q7Z5N4 2213 aa10.71□□□□□ -0.7
SHMT2-226ENST00000556825 IGHV5-51A0A0C4DH38 117 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 GAS8-AS1O95177 125 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 PFN2P35080 140 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 LAGE3Q14657 143 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 THAP8Q8NA92 274 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 KNTC1P50748 2209 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 TRAV41A0A0B4J266 112 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 ELANEP08246 267 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 EXOC3-AS1Q8N2X6 119 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 TMEM263Q8WUH6 116 aaKnown RBP10.7□□□□□ -0.7
SHMT2-226ENST00000556825 AGPAT4-IT1Q9H0P7 198 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 SPEGQ15772 3267 aa10.7□□□□□ -0.7
SHMT2-226ENST00000556825 CABIN1Q9Y6J0 2220 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 H7C423 109 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 J3QQQ9 107 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 UPK2O00526 184 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 WDR86Q86TI4 376 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 NFAM1Q8NET5 270 aaPredicted RBP10.69□□□□□ -0.7
SHMT2-226ENST00000556825 PRR25Q96S07 402 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 SRXN1Q9BYN0 137 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 METRNQ9UJH8 293 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 LILRA5A6NI73 299 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 HIST1H4AP62805 103 aaKnown RBP10.69□□□□□ -0.7
SHMT2-226ENST00000556825 SLC25A29Q8N8R3 303 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 SHANK2-AS3Q9BTD1 123 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 CTSZQ9UBR2 303 aa10.69□□□□□ -0.7
SHMT2-226ENST00000556825 LY6LH3BQJ8 138 aa10.68□□□□□ -0.7
SHMT2-226ENST00000556825 NXPH1P58417 271 aa10.68□□□□□ -0.7
SHMT2-226ENST00000556825 DEFB133Q30KQ1 61 aa10.68□□□□□ -0.7
SHMT2-226ENST00000556825 ZCCHC24Q8N2G6 241 aaKnown RBP10.68□□□□□ -0.7
SHMT2-226ENST00000556825 RNF152Q8N8N0 203 aa10.68□□□□□ -0.7
SHMT2-226ENST00000556825 A0A0B4J2C4 111 aa10.68□□□□□ -0.7
SHMT2-226ENST00000556825 C17orf100A8MU93 164 aa10.68□□□□□ -0.7
SHMT2-226ENST00000556825 LMO7DNF2Z398 122 aa10.68□□□□□ -0.7
SHMT2-226ENST00000556825 C17orf82Q86X59 251 aaPredicted RBP10.68□□□□□ -0.7
SHMT2-226ENST00000556825 KLHL30-AS1Q8NEE0 82 aa10.67□□□□□ -0.7
SHMT2-226ENST00000556825 C9orf85Q96MD7 179 aa10.67□□□□□ -0.7
SHMT2-226ENST00000556825 DPH3P1Q9H4G8 78 aa10.67□□□□□ -0.7
SHMT2-226ENST00000556825 GNG12Q9UBI6 72 aa10.67□□□□□ -0.7
SHMT2-226ENST00000556825 TRBV30A0A0K0K1B3 111 aa10.66□□□□□ -0.7
SHMT2-226ENST00000556825 RNF125Q96EQ8 232 aa10.66□□□□□ -0.7
SHMT2-226ENST00000556825 UPK3BQ9BT76 320 aa10.66□□□□□ -0.7
SHMT2-226ENST00000556825 LAMA1P25391 3075 aa10.66□□□□□ -0.7
SHMT2-226ENST00000556825 EIF4EBP3O60516 100 aaPredicted RBP10.66□□□□□ -0.7
SHMT2-226ENST00000556825 NEXN-AS1Q8NBZ9 246 aa10.66□□□□□ -0.7
SHMT2-226ENST00000556825 H7C2G1 150 aa10.65□□□□□ -0.7
SHMT2-226ENST00000556825 TIMM8AO60220 97 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-226ENST00000556825 Q6ZS46 218 aa10.65□□□□□ -0.7
SHMT2-226ENST00000556825 MBD3L2Q8NHZ7 208 aaPredicted RBP10.65□□□□□ -0.7
SHMT2-226ENST00000556825 SMCR5Q8TEV8 140 aa10.65□□□□□ -0.7
SHMT2-226ENST00000556825 MED12Q93074 2177 aa10.65□□□□□ -0.7
SHMT2-226ENST00000556825 GATA1P15976 413 aaPredicted RBP10.65□□□□□ -0.71
SHMT2-226ENST00000556825 SUB1P53999 127 aaKnown RBP eCLIP10.65□□□□□ -0.712e-7■■■□□ 15.5
SHMT2-226ENST00000556825 ERHP84090 104 aaKnown RBP10.65□□□□□ -0.71
SHMT2-226ENST00000556825 C1orf229Q6ZS94 237 aaPredicted RBP10.65□□□□□ -0.71
SHMT2-226ENST00000556825 SEC16AO15027 2179 aa10.65□□□□□ -0.71
SHMT2-226ENST00000556825 PI4KAP42356 2102 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 ASXL3Q9C0F0 2248 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 SH2D1AO60880 128 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 SDIM1Q6ZPB5 146 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 CCL8P80075 99 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 Q1RN00 199 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 GUSBP11Q6P575 273 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 C10orf105Q8TEF2 133 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 C8orf49Q96NF6 230 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 DCTN5Q9BTE1 182 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 TMEM14CQ9P0S9 112 aa10.64□□□□□ -0.71
SHMT2-226ENST00000556825 C1orf195Q5TG92 126 aa10.63□□□□□ -0.71
SHMT2-226ENST00000556825 PRR7Q8TB68 274 aa10.63□□□□□ -0.71
SHMT2-226ENST00000556825 FAM236DA0A1B0GTK5 79 aa10.62□□□□□ -0.71
SHMT2-226ENST00000556825 FAM236CP0DP71 79 aa10.62□□□□□ -0.71
SHMT2-226ENST00000556825 LOXL3P58215 753 aa10.62□□□□□ -0.71
SHMT2-226ENST00000556825 KLRB1Q12918 225 aa10.62□□□□□ -0.71
SHMT2-226ENST00000556825 TPSG1Q9NRR2 321 aa10.62□□□□□ -0.71
SHMT2-226ENST00000556825 MSRB1Q9NZV6 116 aa10.62□□□□□ -0.71
SHMT2-226ENST00000556825 CFHR1Q03591 330 aa10.62□□□□□ -0.71
SHMT2-226ENST00000556825 MRPL36Q9P0J6 103 aaKnown RBP10.62□□□□□ -0.71
SHMT2-226ENST00000556825 TRIAP1O43715 76 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 IGHV3-48P01763 117 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 SLC25A45Q8N413 288 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 SERP2Q8N6R1 65 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 KLF14Q8TD94 323 aaPredicted RBP10.61□□□□□ -0.71
SHMT2-226ENST00000556825 SCGB3A1Q96QR1 104 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 CNFNQ9BYD5 112 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 FSCN3Q9NQT6 498 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 NDUFA4L2Q9NRX3 87 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 BEX4Q9NWD9 120 aaPredicted RBP10.61□□□□□ -0.71
SHMT2-226ENST00000556825 CACNA1EQ15878 2313 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 IGHV1OR21-1A0A087WYE8 117 aa10.61□□□□□ -0.71
SHMT2-226ENST00000556825 A0A096LPE4 126 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms