RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 C16orf74Q96GX8 76 aa10.07□□□□□ -0.8
PTCH1-226ENST00000553011 PYGO2Q9BRQ0 406 aa10.07□□□□□ -0.8
PTCH1-226ENST00000553011 F6UZH7 168 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 IGLV2-11P01706 119 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 SULT1A2P50226 295 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 CST9LP1Q5W188 147 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 ZNF493Q6ZR52 646 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 LINC00479Q96M42 142 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 ATG101Q9BSB4 218 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 PSG8Q9UQ74 426 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 BOLA1Q9Y3E2 137 aa10.06□□□□□ -0.8
PTCH1-226ENST00000553011 DYNC2H1Q8NCM8 4307 aaKnown RBP10.06□□□□□ -0.8
PTCH1-226ENST00000553011 PLECQ15149 4684 aaKnown RBP10.06□□□□□ -0.8
PTCH1-226ENST00000553011 TRAV34A0A0B4J273 112 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 TEX48A0A1B0GUV7 120 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 K7EQM0 130 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 PEX7O00628 323 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 PAGE4O60829 102 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 ATP5G3P48201 142 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 RAB5CP51148 216 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 CCDC28AQ8IWP9 274 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 C8orf49Q96NF6 230 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 NKX6-2Q9C056 277 aaPredicted RBP10.05□□□□□ -0.8
PTCH1-226ENST00000553011 TREM1Q9NP99 234 aa10.05□□□□□ -0.8
PTCH1-226ENST00000553011 TRAV10A0A0B4J240 114 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 LYRM9A8MSI8 78 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 C11orf94C9JXX5 98 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 RGS13O14921 159 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 DAD1P61803 113 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 CCL20P78556 96 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 FLI1Q01543 452 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-226ENST00000553011 Q6AWC8 147 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 PRNTQ86SH4 94 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 EIF4E3Q8N5X7 224 aaKnown RBP10.04□□□□□ -0.8
PTCH1-226ENST00000553011 TMEM75Q8N9X5 138 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 LINC00467Q9BRT7 94 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 NOP10Q9NPE3 64 aaKnown RBP10.04□□□□□ -0.8
PTCH1-226ENST00000553011 TP53TG3Q9ULZ0 132 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 KLK5Q9Y337 293 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-226ENST00000553011 TIMM8BQ9Y5J9 83 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-226ENST00000553011 ARL2-SNX15V9GYD0 113 aa10.04□□□□□ -0.8
PTCH1-226ENST00000553011 IGHV1OR15-1A0A075B7D0 117 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 DEFB131BA0A096LNP1 70 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 TRAV1-1A0A0B4J248 108 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 CBY3A6NI87 242 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 DEFB130BP0DP73 79 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 DEFB130AP0DP74 79 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 ANXA2RQ3ZCQ2 193 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 MUC21Q5SSG8 566 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 C11orf72Q8NBR9 251 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 HIST1H2BAQ96A08 127 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 MUC4Q99102 2169 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 NDFIP1Q9BT67 221 aa10.03□□□□□ -0.8
PTCH1-226ENST00000553011 ALKAL2Q6UX46 152 aa10.02□□□□□ -0.81
PTCH1-226ENST00000553011 C2CD4CQ8TF44 421 aa10.02□□□□□ -0.81
PTCH1-226ENST00000553011 GSN-AS1Q9NRJ2 163 aa10.02□□□□□ -0.81
PTCH1-226ENST00000553011 FBLL1A6NHQ2 334 aaKnown RBP10.01□□□□□ -0.81
PTCH1-226ENST00000553011 SNURFLB1AK76 121 aa10.01□□□□□ -0.81
PTCH1-226ENST00000553011 IGLL5B9A064 214 aa10.01□□□□□ -0.81
PTCH1-226ENST00000553011 HTN3P15516 51 aa10.01□□□□□ -0.81
PTCH1-226ENST00000553011 PPT1P50897 306 aa10.01□□□□□ -0.81
PTCH1-226ENST00000553011 ZNF80P51504 273 aaPredicted RBP10.01□□□□□ -0.81
PTCH1-226ENST00000553011 Q86TA4 180 aa10.01□□□□□ -0.81
PTCH1-226ENST00000553011 ZNF680Q8NEM1 530 aa10.01□□□□□ -0.81
PTCH1-226ENST00000553011 GNG13Q9P2W3 67 aa10.01□□□□□ -0.81
PTCH1-226ENST00000553011 NAGKQ9UJ70 344 aa10.01□□□□□ -0.81
PTCH1-226ENST00000553011 TRAV21A0A0B4J279 112 aa10□□□□□ -0.81
PTCH1-226ENST00000553011 LCE6AA0A183 80 aa10□□□□□ -0.81
PTCH1-226ENST00000553011 GCGP01275 180 aa10□□□□□ -0.81
PTCH1-226ENST00000553011 AKR1C3P42330 323 aa10□□□□□ -0.81
PTCH1-226ENST00000553011 TCEAL7Q9BRU2 100 aa10□□□□□ -0.81
PTCH1-226ENST00000553011 KLF12Q9Y4X4 402 aa10□□□□□ -0.81
PTCH1-226ENST00000553011 NACAE9PAV3 2078 aa10□□□□□ -0.81
PTCH1-226ENST00000553011 SCO2A0A1W2PP80 73 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 TEX46H3BTG2 121 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 TCL1AP56279 114 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 DAZ2Q13117 558 aaKnown RBP9.99□□□□□ -0.81
PTCH1-226ENST00000553011 TMEM183BQ1AE95 376 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 SMUG1Q53HV7 270 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 SAPCD1Q5SSQ6 148 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 FAM159AQ6UWV7 190 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 TMEM183AQ8IXX5 376 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 LINC00612Q8N6U2 182 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 MANBALQ9NQG1 85 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 LYSTQ99698 3801 aa9.99□□□□□ -0.81
PTCH1-226ENST00000553011 ALMS1Q8TCU4 4167 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 IGHV4-4A0A075B6R2 117 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 GAGE12BA1L429 117 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 GAGE7O76087 117 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 GAGE12FP0CL80 117 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 GAGE12GP0CL81 117 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 GAGE12IP0CL82 117 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 UBE2G1P62253 170 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 TDRG1Q3Y452 100 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 IBA57Q5T440 356 aaKnown RBP9.98□□□□□ -0.81
PTCH1-226ENST00000553011 Q6ZTI0 123 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 FMC1Q96HJ9 113 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 MDFICQ9P1T7 246 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 C11orf21Q9P2W6 132 aa9.98□□□□□ -0.81
PTCH1-226ENST00000553011 APLNQ9ULZ1 77 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms