RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 GAGE12BA1L429 117 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 HMSDA8MTL9 139 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 K7EQM0 130 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 GAGE7O76087 117 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 GAGE12FP0CL80 117 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 GAGE12GP0CL81 117 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 GAGE12IP0CL82 117 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 KCNRGQ8N5I3 272 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 LINC00612Q8N6U2 182 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 POM121L12Q8N7R1 296 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 CYTL1Q9NRR1 136 aa11.09□□□□□ -0.63
CCDC78-216ENST00000544996 A0A0D9SG52 128 aa11.08□□□□□ -0.64
CCDC78-216ENST00000544996 GNG5P63218 68 aa11.08□□□□□ -0.64
CCDC78-216ENST00000544996 IBA57Q5T440 356 aaKnown RBP11.08□□□□□ -0.64
CCDC78-216ENST00000544996 UBE2DNLQ8IWF7 75 aa11.08□□□□□ -0.64
CCDC78-216ENST00000544996 C11orf72Q8NBR9 251 aa11.08□□□□□ -0.64
CCDC78-216ENST00000544996 NDFIP1Q9BT67 221 aa11.08□□□□□ -0.64
CCDC78-216ENST00000544996 TCRAP04437 139 aa11.07□□□□□ -0.64
CCDC78-216ENST00000544996 TCL1AP56279 114 aa11.07□□□□□ -0.64
CCDC78-216ENST00000544996 SUMO1P63165 101 aaKnown RBP11.07□□□□□ -0.64
CCDC78-216ENST00000544996 Q6AWC8 147 aa11.07□□□□□ -0.64
CCDC78-216ENST00000544996 FAM159AQ6UWV7 190 aa11.07□□□□□ -0.64
CCDC78-216ENST00000544996 Q6ZTI0 123 aa11.07□□□□□ -0.64
CCDC78-216ENST00000544996 SSX7Q7RTT5 188 aa11.07□□□□□ -0.64
CCDC78-216ENST00000544996 TREM1Q9NP99 234 aa11.07□□□□□ -0.64
CCDC78-216ENST00000544996 HYDINQ4G0P3 5121 aa11.07□□□□□ -0.64
CCDC78-216ENST00000544996 TRGV2A0A075B6R0 118 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 TRGV1A0A0A0MS02 117 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 TRAV8-1A0A0A6YYK1 113 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 KANTRA0A1W2PQU2 76 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 A0A1W2PRE2 83 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 OR5I1Q13606 314 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 ZNF726P1Q15940 193 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 MUC21Q5SSG8 566 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 Q6ZQT7 251 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 OR11H4Q8NGC9 324 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 TP53TG3Q9ULZ0 132 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 EPDR1Q9UM22 224 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 KLF12Q9Y4X4 402 aa11.06□□□□□ -0.64
CCDC78-216ENST00000544996 NUDT3O95989 172 aa11.05□□□□□ -0.64
CCDC78-216ENST00000544996 ZNF415Q09FC8 603 aa11.05□□□□□ -0.64
CCDC78-216ENST00000544996 RNF212Q495C1 297 aa11.05□□□□□ -0.64
CCDC78-216ENST00000544996 ZNF471Q9BX82 626 aaPredicted RBP11.05□□□□□ -0.64
CCDC78-216ENST00000544996 NKX6-2Q9C056 277 aaPredicted RBP11.05□□□□□ -0.64
CCDC78-216ENST00000544996 TRAV21A0A0B4J279 112 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 MAP1LC3B2A6NCE7 125 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 FBLL1A6NHQ2 334 aaKnown RBP11.04□□□□□ -0.64
CCDC78-216ENST00000544996 GGTLC3B5MD39 225 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 BCL2L11O43521 198 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 IFNA7P01567 189 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 EIF5AP63241 154 aaKnown RBP11.04□□□□□ -0.64
CCDC78-216ENST00000544996 LGALS9BQ3B8N2 356 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 CYB561D1Q8N8Q1 229 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 STOML3Q8TAV4 291 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 SGK494Q96LW2 274 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 C18orf15Q96N68 181 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 ATG101Q9BSB4 218 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 MAP1LC3BQ9GZQ8 125 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 NAGKQ9UJ70 344 aa11.04□□□□□ -0.64
CCDC78-216ENST00000544996 TRGV11A0A075B6L2 103 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 UMAD1C9J7I0 102 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 F6UZH7 168 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 SPINK4O60575 86 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 PFDN1O60925 122 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 SEC11BP0C7V7 166 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 FGF8P55075 233 aaPredicted RBP11.03□□□□□ -0.64
CCDC78-216ENST00000544996 TVP23CQ96ET8 276 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 TMPRSS5Q9H3S3 457 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 PSG8Q9UQ74 426 aa11.03□□□□□ -0.64
CCDC78-216ENST00000544996 TRAV26-1A0A087WT03 109 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 HOXA5P20719 270 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 PPT1P50897 306 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 UBE2G2P60604 165 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 FLI1Q01543 452 aaPredicted RBP11.02□□□□□ -0.65
CCDC78-216ENST00000544996 TMEM183BQ1AE95 376 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 TDRG1Q3Y452 100 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 ZFP69Q49AA0 526 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 SAPCD1Q5SSQ6 148 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 TMEM183AQ8IXX5 376 aa11.02□□□□□ -0.65
CCDC78-216ENST00000544996 CCL18P55774 89 aa11.01□□□□□ -0.65
CCDC78-216ENST00000544996 FAM3BP58499 235 aaPredicted RBP11.01□□□□□ -0.65
CCDC78-216ENST00000544996 TMUB2Q71RG4 321 aa11.01□□□□□ -0.65
CCDC78-216ENST00000544996 PRNTQ86SH4 94 aa11.01□□□□□ -0.65
CCDC78-216ENST00000544996 TMEM75Q8N9X5 138 aa11.01□□□□□ -0.65
CCDC78-216ENST00000544996 KCNS1Q96KK3 526 aa11.01□□□□□ -0.65
CCDC78-216ENST00000544996 SPXQ9BT56 116 aa11.01□□□□□ -0.65
CCDC78-216ENST00000544996 MDFICQ9P1T7 246 aa11.01□□□□□ -0.65
CCDC78-216ENST00000544996 A0A0J9YY99 117 aa11□□□□□ -0.65
CCDC78-216ENST00000544996 A0A1B0GVG6 124 aa11□□□□□ -0.65
CCDC78-216ENST00000544996 FAM74A7A6NL05 159 aa11□□□□□ -0.65
CCDC78-216ENST00000544996 H3BNG1 76 aa11□□□□□ -0.65
CCDC78-216ENST00000544996 IGLV2-11P01706 119 aa11□□□□□ -0.65
CCDC78-216ENST00000544996 FHITP49789 147 aa11□□□□□ -0.65
CCDC78-216ENST00000544996 HIST1H2BAQ96A08 127 aa11□□□□□ -0.65
CCDC78-216ENST00000544996 SDF2L1Q9HCN8 221 aa11□□□□□ -0.65
CCDC78-216ENST00000544996 MRPL16Q9NX20 251 aaKnown RBP11□□□□□ -0.65
CCDC78-216ENST00000544996 GCGP01275 180 aa10.99□□□□□ -0.65
CCDC78-216ENST00000544996 TPT1P13693 172 aaKnown RBP10.99□□□□□ -0.65
CCDC78-216ENST00000544996 SMUG1Q53HV7 270 aa10.99□□□□□ -0.65
CCDC78-216ENST00000544996 DPPA3Q6W0C5 159 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms