RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 PRSS46E5RG02 174 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 ORMDL2Q53FV1 153 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 CFAP54Q96N23 3096 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 CCDC168Q8NDH2 2452 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 OTOGLQ3ZCN5 2332 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 PRSS29PA6NIE9 313 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 WISP2O76076 250 aa11.31□□□□□ -0.6
LIMS1-215ENST00000544547 RNASE1P07998 156 aaKnown RBP11.31□□□□□ -0.6
LIMS1-215ENST00000544547 ZNF672Q499Z4 452 aaPredicted RBP11.31□□□□□ -0.6
LIMS1-215ENST00000544547 THBDP07204 575 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 SPRNQ5BIV9 151 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 SHANK2-AS3Q9BTD1 123 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 VCANP13611 3396 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 SORL1Q92673 2214 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 C8orf86Q6ZUL3 223 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 C2orf91Q6ZV80 131 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 NUP37Q8NFH4 326 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 SLC25A15Q9Y619 301 aa11.3□□□□□ -0.6
LIMS1-215ENST00000544547 SZT2Q5T011 3432 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 NPFFO15130 113 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 C14orf178Q8N769 122 aaPredicted RBP11.29□□□□□ -0.6
LIMS1-215ENST00000544547 DUX3Q96PT4 197 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 C10orf142B7Z368 130 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 LYPD2Q6UXB3 125 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 A0A0U1RRA0 63 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 A0A1W2PRX2 142 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 KLF12Q9Y4X4 402 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 MYMXA0A1B0GTQ4 84 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 C22orf46C9J442 243 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 GAGE5Q13069 117 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 GAGE6Q13070 117 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 PRADC1Q9BSG0 188 aa11.29□□□□□ -0.6
LIMS1-215ENST00000544547 OR13C6PQ8NH95 151 aa11.28□□□□□ -0.6
LIMS1-215ENST00000544547 TRANK1O15050 2925 aa11.28□□□□□ -0.6
LIMS1-215ENST00000544547 RNASE4P34096 147 aaKnown RBP11.28□□□□□ -0.6
LIMS1-215ENST00000544547 POU2AF1Q16633 256 aa11.28□□□□□ -0.6
LIMS1-215ENST00000544547 C1QTNF4Q9BXJ3 329 aa11.28□□□□□ -0.6
LIMS1-215ENST00000544547 VWC2LB2RUY7 222 aa11.27□□□□□ -0.6
LIMS1-215ENST00000544547 RNF182Q8N6D2 247 aa11.27□□□□□ -0.6
LIMS1-215ENST00000544547 SPEGQ15772 3267 aa11.27□□□□□ -0.6
LIMS1-215ENST00000544547 MYO9AB2RTY4 2548 aa11.27□□□□□ -0.6
LIMS1-215ENST00000544547 DTX2Q86UW9 622 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 PRR25Q96S07 402 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 SPRY2O43597 315 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 IGHV1-8P0DP01 117 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 EGR2P11161 476 aaPredicted RBP11.27□□□□□ -0.61
LIMS1-215ENST00000544547 ZNF474Q6S9Z5 364 aaPredicted RBP11.27□□□□□ -0.61
LIMS1-215ENST00000544547 LINC01587Q99440 93 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 IGHV1-3A0A0C4DH29 117 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 HLA-DMBP28068 263 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 C11orf44Q8N8P7 122 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 SLC50A1Q9BRV3 221 aa11.27□□□□□ -0.61
LIMS1-215ENST00000544547 IGKV3D-20A0A0C4DH25 116 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 C1orf229Q6ZS94 237 aaPredicted RBP11.26□□□□□ -0.61
LIMS1-215ENST00000544547 LYPD1Q8N2G4 141 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 C3orf56Q8N813 242 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 CD7P09564 240 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 C2orf82Q6UX34 121 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 THAP8Q8NA92 274 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 RNF183Q96D59 192 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 TECTAO75443 2155 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 LINC01559Q495D7 138 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 TOMM7Q9P0U1 55 aa11.26□□□□□ -0.61
LIMS1-215ENST00000544547 GP9P14770 177 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 Q8N8P6 123 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 URB1-AS1Q96HZ7 61 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 YAE1D1Q9NRH1 226 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 GAGE12JA6NER3 117 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 GAGE7O76087 117 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 GAGE12FP0CL80 117 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 GAGE12GP0CL81 117 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 GAGE12IP0CL82 117 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 FOXI1Q12951 378 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 GAGE4Q13068 117 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 NEGR1Q7Z3B1 354 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 PRSS22Q9GZN4 317 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 ABCA2Q9BZC7 2435 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 TRGV2A0A075B6R0 118 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 ZNF688P0C7X2 276 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 CITED1Q99966 193 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 LRP4O75096 1905 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 FGF6P10767 208 aa11.25□□□□□ -0.61
LIMS1-215ENST00000544547 NACAE9PAV3 2078 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 LAMA1P25391 3075 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 C19orf71A6NCJ1 209 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 DNAL4O96015 105 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 MT-ATP8P03928 68 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 HTN3P15516 51 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 C2orf66Q6UXQ4 117 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 IGKV2D-26A0A0A0MRZ7 120 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 TMEM178BH3BS89 294 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 ATG2AQ2TAZ0 1938 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 F8VRH5 84 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 ZNF833PQ6ZTB9 187 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 OR11H6Q8NGC7 330 aa11.24□□□□□ -0.61
LIMS1-215ENST00000544547 A0A1W2PNU3 283 aaPredicted RBP11.23□□□□□ -0.61
LIMS1-215ENST00000544547 IL17RELQ6ZVW7 336 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 DPH3Q96FX2 82 aa11.23□□□□□ -0.61
LIMS1-215ENST00000544547 SPANXB1Q9NS25 103 aaPredicted RBP11.23□□□□□ -0.61
LIMS1-215ENST00000544547 INSL3P51460 131 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms