RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CCSO14618 274 aa11.88□□□□□ -0.51
CLSTN3-214ENST00000542663 BTCP35070 178 aa11.88□□□□□ -0.51
CLSTN3-214ENST00000542663 VAMP2P63027 116 aa11.88□□□□□ -0.51
CLSTN3-214ENST00000542663 BAK1Q16611 211 aa11.88□□□□□ -0.51
CLSTN3-214ENST00000542663 Q8TAT8 98 aa11.88□□□□□ -0.51
CLSTN3-214ENST00000542663 TXNDC17Q9BRA2 123 aa11.88□□□□□ -0.51
CLSTN3-214ENST00000542663 AAMDCQ9H7C9 122 aa11.88□□□□□ -0.51
CLSTN3-214ENST00000542663 IGHV3-38A0A0C4DH36 116 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 UBE2L5PA0A1B0GUS4 154 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 NAP1L6A6NFF2 107 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 FAM24AA6NFZ4 105 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 IBA57-AS1B1ANH7 110 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 C1QBP02746 253 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 PLA2G1BP04054 148 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 BCAP31P51572 246 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 CAV2P51636 162 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 BAXQ07812 192 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 GCSAMLQ5JQS6 135 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 SPANXN2Q5MJ10 180 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 CHAC2Q8WUX2 184 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 SLC25A2Q9BXI2 301 aa11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 LSM5Q9Y4Y9 91 aaKnown RBP11.87□□□□□ -0.51
CLSTN3-214ENST00000542663 C9JCJ5 164 aa11.86□□□□□ -0.51
CLSTN3-214ENST00000542663 ZNF138P52744 262 aa11.86□□□□□ -0.51
CLSTN3-214ENST00000542663 LINC01556Q5JQF7 62 aa11.86□□□□□ -0.51
CLSTN3-214ENST00000542663 Q6ZSA8 131 aa11.86□□□□□ -0.51
CLSTN3-214ENST00000542663 LINC00528Q8N1L1 170 aa11.86□□□□□ -0.51
CLSTN3-214ENST00000542663 FAM167A-AS1Q96KT0 104 aa11.86□□□□□ -0.51
CLSTN3-214ENST00000542663 C20orf85Q9H1P6 137 aa11.86□□□□□ -0.51
CLSTN3-214ENST00000542663 TRBV7-9A0A0J9YWB2 115 aa11.85□□□□□ -0.51
CLSTN3-214ENST00000542663 ZNF266Q14584 549 aa11.85□□□□□ -0.51
CLSTN3-214ENST00000542663 SPXQ9BT56 116 aa11.85□□□□□ -0.51
CLSTN3-214ENST00000542663 Q9HAA7 133 aa11.85□□□□□ -0.51
CLSTN3-214ENST00000542663 FAT3Q8TDW7 4589 aa11.85□□□□□ -0.51
CLSTN3-214ENST00000542663 TRAV4A0A0B4J268 109 aa11.84□□□□□ -0.51
CLSTN3-214ENST00000542663 IGSF23A1L1A6 192 aa11.84□□□□□ -0.51
CLSTN3-214ENST00000542663 TIRAPP58753 221 aa11.84□□□□□ -0.51
CLSTN3-214ENST00000542663 TMEM183BQ1AE95 376 aa11.84□□□□□ -0.51
CLSTN3-214ENST00000542663 TMEM183AQ8IXX5 376 aa11.84□□□□□ -0.51
CLSTN3-214ENST00000542663 DEFB104AQ8WTQ1 72 aa11.84□□□□□ -0.51
CLSTN3-214ENST00000542663 NDUFA13Q9P0J0 144 aa11.84□□□□□ -0.51
CLSTN3-214ENST00000542663 NBEAP1P0C6P0 100 aa11.83□□□□□ -0.52
CLSTN3-214ENST00000542663 FGF7P21781 194 aa11.83□□□□□ -0.52
CLSTN3-214ENST00000542663 SULT1A1P50225 295 aa11.83□□□□□ -0.52
CLSTN3-214ENST00000542663 WFDC2Q14508 124 aa11.83□□□□□ -0.52
CLSTN3-214ENST00000542663 Q6AWC8 147 aa11.83□□□□□ -0.52
CLSTN3-214ENST00000542663 SLC25A31Q9H0C2 315 aa11.83□□□□□ -0.52
CLSTN3-214ENST00000542663 GPN1Q9HCN4 374 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-214ENST00000542663 S100A11P31949 105 aa11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 INPP1P49441 399 aa11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 ZNF846Q147U1 533 aa11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 SERTAD4-AS1Q5TG53 156 aa11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 TRIQKQ629K1 86 aa11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 MIR17HGQ75NE6 70 aa11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 PHYHIPLQ96FC7 376 aa11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 SDHCQ99643 169 aaPredicted RBP11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 LYRM2Q9NU23 88 aaPredicted RBP11.82□□□□□ -0.52
CLSTN3-214ENST00000542663 SH2D6Q7Z4S9 175 aa11.81□□□□□ -0.52
CLSTN3-214ENST00000542663 TMEM252Q8N6L7 170 aa11.81□□□□□ -0.52
CLSTN3-214ENST00000542663 NHLRC2Q8NBF2 726 aa11.81□□□□□ -0.52
CLSTN3-214ENST00000542663 OR4C5Q8NGB2 326 aa11.81□□□□□ -0.52
CLSTN3-214ENST00000542663 FXYD5Q96DB9 178 aa11.81□□□□□ -0.52
CLSTN3-214ENST00000542663 NPCDR1Q9BY65 106 aa11.81□□□□□ -0.52
CLSTN3-214ENST00000542663 TRGV11A0A075B6L2 103 aa11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 IGHV3-16A0A0C4DH30 117 aa11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 RBAKDNA6NC62 111 aa11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 FAM25EA8MYX2 175 aa11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 OR10J4P0C629 311 aa11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 GATA1P15976 413 aaPredicted RBP11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 PPT1P50897 306 aa11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 KRTAP10-4P60372 401 aaPredicted RBP11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 FAM159AQ6UWV7 190 aa11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 OR51M1Q9H341 326 aa11.8□□□□□ -0.52
CLSTN3-214ENST00000542663 IGHV3-30P01768 117 aa11.79□□□□□ -0.52
CLSTN3-214ENST00000542663 IGHV3-33P01772 117 aa11.79□□□□□ -0.52
CLSTN3-214ENST00000542663 IGHV3-30-3P0DP02 117 aa11.79□□□□□ -0.52
CLSTN3-214ENST00000542663 IGHV3-30-5P0DP03 117 aa11.79□□□□□ -0.52
CLSTN3-214ENST00000542663 TDRG1Q3Y452 100 aa11.79□□□□□ -0.52
CLSTN3-214ENST00000542663 M0R2P5 195 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 GNRH2O43555 120 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 PVALBP20472 110 aaPredicted RBP11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 HBG1P69891 147 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 HBG2P69892 147 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 IL15RAQ13261 267 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 OR10J3Q5JRS4 329 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 STX12Q86Y82 276 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 C2orf50Q96LR7 162 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 PAXXQ9BUH6 204 aa11.78□□□□□ -0.52
CLSTN3-214ENST00000542663 PKHD1L1Q86WI1 4243 aa11.77□□□□□ -0.52
CLSTN3-214ENST00000542663 TRAV8-6A0A0B4J262 113 aa11.77□□□□□ -0.53
CLSTN3-214ENST00000542663 C5orf51A6NDU8 294 aa11.77□□□□□ -0.53
CLSTN3-214ENST00000542663 S100A10P60903 97 aa11.77□□□□□ -0.53
CLSTN3-214ENST00000542663 RAB32Q13637 225 aa11.77□□□□□ -0.53
CLSTN3-214ENST00000542663 ATP6V1FQ16864 119 aa11.77□□□□□ -0.53
CLSTN3-214ENST00000542663 SLC25A29Q8N8R3 303 aa11.77□□□□□ -0.53
CLSTN3-214ENST00000542663 SYT8Q8NBV8 401 aa11.77□□□□□ -0.53
CLSTN3-214ENST00000542663 NAGKQ9UJ70 344 aa11.77□□□□□ -0.53
CLSTN3-214ENST00000542663 CENPXA8MT69 81 aa11.76□□□□□ -0.53
CLSTN3-214ENST00000542663 IL7P13232 177 aa11.76□□□□□ -0.53
CLSTN3-214ENST00000542663 RANP62826 216 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms