RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 PRDX2P32119 198 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 ADORA2A-AS1P86434 159 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 KHDC1LQ5JSQ8 128 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 OR13A1Q8NGR1 328 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 RITA1Q96K30 269 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 PSPNO60542 156 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 CRLF1O75462 422 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 VMA21Q3ZAQ7 101 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 TMEM101Q96IK0 257 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 SLC25A39Q9BZJ4 359 aaPredicted RBP8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 MRPL35Q9NZE8 188 aaKnown RBP8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 FAM215AQ9Y5M1 114 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 ZNF292O60281 2723 aa8.59□□□□□ -1.03
CLSTN3-207ENST00000537408 LRRK2Q5S007 2527 aa8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 NDUFA7O95182 113 aa8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 FAM19A5Q7Z5A7 132 aaPredicted RBP8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 OR4C13Q8NGP0 309 aa8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 NAV3Q8IVL0 2385 aa8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 LYZL1Q6UWQ5 148 aa8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 LINC01587Q99440 93 aa8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 CHCHD5Q9BSY4 110 aa8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 NTN5Q8WTR8 489 aaPredicted RBP8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 NPIPB3Q92617 1050 aa8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 BEX4Q9NWD9 120 aaPredicted RBP8.58□□□□□ -1.04
CLSTN3-207ENST00000537408 Q6ZQT7 251 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 A0A1B0GX51 115 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 RNASE2P10153 161 aaKnown RBP8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 HEATR1Q9H583 2144 aaKnown RBP8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 ADAMTS20P59510 1910 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 SMKR1H3BMG3 65 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 UPK2O00526 184 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 NAV2Q8IVL1 2488 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 PTPRBP23467 1997 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 ZNF815PA8K554 130 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 H3BTX0 84 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 RPL13AP40429 203 aaKnown RBP8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 MLANAQ16655 118 aa8.57□□□□□ -1.04
CLSTN3-207ENST00000537408 DOCK10Q96BY6 2186 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 LRP4O75096 1905 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 CADP27708 2225 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 LGALS1P09382 135 aaKnown RBP8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 ZNF56Q15929 161 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 PRUNE2Q8WUY3 3088 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 H3BMM0 161 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 HERVK_113P63121 156 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 SPRNQ5BIV9 151 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 PATE2Q6UY27 113 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 Q8N1Y9 231 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 C3orf22Q8N5N4 141 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 UBE2WQ96B02 151 aa8.56□□□□□ -1.04
CLSTN3-207ENST00000537408 F5H768 121 aa8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 H7C1H1 209 aa8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 TRBV6-1A0A0K0K1D8 114 aa8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 LOC107984640A0A0U1RRK4 108 aa8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 Q1RN00 199 aa8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 TMEM219Q86XT9 240 aa8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 MRPL20Q9BYC9 149 aaKnown RBP8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 ATXN8Q156A1 80 aa8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 ZNF474Q6S9Z5 364 aaPredicted RBP8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 ZNF256Q9Y2P7 627 aaPredicted RBP8.55□□□□□ -1.04
CLSTN3-207ENST00000537408 UQCRQO14949 82 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 HLA-DMBP28068 263 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 UBE2D1P51668 147 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 PAX8Q06710 450 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 MRAPQ8TCY5 172 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 EDA2RQ9HAV5 297 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 HERVK_113P61574 105 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 NDUFA11Q86Y39 141 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 TMEM75Q8N9X5 138 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 WNT9BO14905 357 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 SLC25A16P16260 332 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 COX7A1P24310 79 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 GAGE2AQ6NT46 116 aa8.54□□□□□ -1.04
CLSTN3-207ENST00000537408 CD7P09564 240 aa8.53□□□□□ -1.04
CLSTN3-207ENST00000537408 PMVKQ15126 192 aa8.53□□□□□ -1.04
CLSTN3-207ENST00000537408 CCL13Q99616 98 aa8.53□□□□□ -1.04
CLSTN3-207ENST00000537408 EFNA4P52798 201 aa8.53□□□□□ -1.04
CLSTN3-207ENST00000537408 Q8N8P6 123 aa8.53□□□□□ -1.04
CLSTN3-207ENST00000537408 DUX5Q96PT3 197 aa8.53□□□□□ -1.04
CLSTN3-207ENST00000537408 PRO1854Q9UHT4 67 aa8.53□□□□□ -1.04
CLSTN3-207ENST00000537408 FBXL19-AS1Q494R0 122 aa8.53□□□□□ -1.04
CLSTN3-207ENST00000537408 HIVEP3Q5T1R4 2406 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 FAM236AA0A1B0GUQ0 79 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 FAM236BA0A1B0GV22 79 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 LINC01548A6NM66 108 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 F8VRH5 84 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 TNFRSF6BO95407 300 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 DEFB113Q30KQ7 82 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 WDR86Q86TI4 376 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 THAP8Q8NA92 274 aa8.52□□□□□ -1.04
CLSTN3-207ENST00000537408 RPS28P62857 69 aaKnown RBP8.52□□□□□ -1.05
CLSTN3-207ENST00000537408 LAGE3Q14657 143 aa8.52□□□□□ -1.05
CLSTN3-207ENST00000537408 DCTN5Q9BTE1 182 aa8.52□□□□□ -1.05
CLSTN3-207ENST00000537408 TIMM23O14925 209 aa8.52□□□□□ -1.05
CLSTN3-207ENST00000537408 HOXA4Q00056 320 aaPredicted RBP8.52□□□□□ -1.05
CLSTN3-207ENST00000537408 ODF3Q96PU9 254 aa8.52□□□□□ -1.05
CLSTN3-207ENST00000537408 C15orf65H3BRN8 121 aa8.51□□□□□ -1.05
CLSTN3-207ENST00000537408 PROP1O75360 226 aa8.51□□□□□ -1.05
CLSTN3-207ENST00000537408 ATP5G1P05496 136 aa8.51□□□□□ -1.05
CLSTN3-207ENST00000537408 TANC2Q9HCD6 1990 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms