RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 GNB1LQ9BYB4 327 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 MRPL18Q9H0U6 180 aaKnown RBP9.05□□□□□ -0.96
CLIP1-208ENST00000537004 ZNF331Q9NQX6 463 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-208ENST00000537004 ZFP30Q9Y2G7 519 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 U3KQE9 123 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 IGHV3-49A0A0A0MS15 119 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 A0A0G2JLM5 398 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 SERTM2A0A1B0GWG4 89 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 SNURFLB1AK76 121 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 LINC00614P0C842 121 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 G0S2P27469 103 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 MRPL54Q6P161 138 aaKnown RBP9.05□□□□□ -0.96
CLIP1-208ENST00000537004 WDR73Q6P4I2 378 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 ARL6IP6Q8N6S5 226 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 NUP35Q8NFH5 326 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 C4orf3Q8WVX3 66 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 NAT8BQ9UHF3 227 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 COL7A1Q02388 2944 aa9.05□□□□□ -0.96
CLIP1-208ENST00000537004 DLEU1O43261 78 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 MT-ND6P03923 174 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 ZNF25P17030 456 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-208ENST00000537004 COX19Q49B96 90 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 CT83Q5H943 113 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 IGFL4Q6B9Z1 124 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 GBGT1Q8N5D6 347 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 ZC2HC1AQ96GY0 325 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 UBE2E2Q96LR5 201 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 ASCL2Q99929 193 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 IGKV2-40A0A087WW87 121 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-208ENST00000537004 HIGD1CA8MV81 97 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 A8MWL6 223 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 NDUFA4O00483 81 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 CHEK1O14757 476 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 IGKV2D-40P01614 121 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-208ENST00000537004 HLA-DMBP28068 263 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 TMEM136Q6ZRR5 245 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 GOLT1BQ9Y3E0 138 aa9.04□□□□□ -0.96
CLIP1-208ENST00000537004 KIR2DL5BA0A0G2JN68 375 aa9.03□□□□□ -0.96
CLIP1-208ENST00000537004 KIR2DL5BA0A0G2JPC4 375 aa9.03□□□□□ -0.96
CLIP1-208ENST00000537004 NPIPB6E9PJ23 425 aa9.03□□□□□ -0.96
CLIP1-208ENST00000537004 FHL3Q13643 280 aa9.03□□□□□ -0.96
CLIP1-208ENST00000537004 ANKRD39Q53RE8 183 aa9.03□□□□□ -0.96
CLIP1-208ENST00000537004 UNQ9165/PRO28630Q6UXU0 137 aa9.03□□□□□ -0.96
CLIP1-208ENST00000537004 KIR2DL5AQ8N109 375 aa9.03□□□□□ -0.96
CLIP1-208ENST00000537004 ZNF705FA8MVS1 300 aaPredicted RBP9.02□□□□□ -0.97
CLIP1-208ENST00000537004 OR1N2Q8NGR9 330 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 C8orf49Q96NF6 230 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 SLC50A1Q9BRV3 221 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 HLA-DQA1P01909 254 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 LCN12Q6JVE5 192 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 RASL11AQ6T310 242 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 TCF24Q7RTU0 167 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 OR4B1Q8NGF8 309 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 MRAPQ8TCY5 172 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 GTSF1Q8WW33 167 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 TMEM208Q9BTX3 173 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 GFRA4Q9GZZ7 299 aa9.02□□□□□ -0.97
CLIP1-208ENST00000537004 GRIFINA4D1Z8 144 aa9.01□□□□□ -0.97
CLIP1-208ENST00000537004 FBLL1A6NHQ2 334 aaKnown RBP9.01□□□□□ -0.97
CLIP1-208ENST00000537004 CT45A10P0DMU9 189 aa9.01□□□□□ -0.97
CLIP1-208ENST00000537004 SLURP1P55000 103 aa9.01□□□□□ -0.97
CLIP1-208ENST00000537004 C16orf54Q6UWD8 224 aa9.01□□□□□ -0.97
CLIP1-208ENST00000537004 RNF182Q8N6D2 247 aa9.01□□□□□ -0.97
CLIP1-208ENST00000537004 OR2D3Q8NGH3 330 aa9.01□□□□□ -0.97
CLIP1-208ENST00000537004 VGLL1Q99990 258 aa9.01□□□□□ -0.97
CLIP1-208ENST00000537004 IGHV4OR15-8A0A075B7B6 117 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 A0A087WW49 117 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 K7EIL1 84 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 CRIP1P50238 77 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 ATP5L2Q7Z4Y8 100 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 GLMPQ8WWB7 406 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 FAM231BA6NCW3 169 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 CRISP2P16562 243 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 PCP4P48539 62 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 EGFEM1PQ0D2K5 195 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 SAPCD1Q5SSQ6 148 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 RBPMS2Q6ZRY4 209 aaKnown RBP9□□□□□ -0.97
CLIP1-208ENST00000537004 Q8TAT8 98 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 DLX4Q92988 240 aaPredicted RBP9□□□□□ -0.97
CLIP1-208ENST00000537004 PRR25Q96S07 402 aa9□□□□□ -0.97
CLIP1-208ENST00000537004 TRAV8-2A0A0B4J237 113 aa8.99□□□□□ -0.97
CLIP1-208ENST00000537004 A0A1B0GXF2 115 aa8.99□□□□□ -0.97
CLIP1-208ENST00000537004 LGALS1P09382 135 aaKnown RBP8.99□□□□□ -0.97
CLIP1-208ENST00000537004 COX8CQ7Z4L0 72 aa8.99□□□□□ -0.97
CLIP1-208ENST00000537004 DPF1Q92782 380 aa8.99□□□□□ -0.97
CLIP1-208ENST00000537004 PGLYRP4Q96LB8 373 aa8.99□□□□□ -0.97
CLIP1-208ENST00000537004 PEF1Q9UBV8 284 aaKnown RBP8.99□□□□□ -0.97
CLIP1-208ENST00000537004 RBAKDNA6NC62 111 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 PRAC2D3DTV9 90 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 APCSP02743 223 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 CAMPP49913 170 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 SLAQ13239 276 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 KIAA1644Q3SXP7 199 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 GDF5OSQ5U4N7 250 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 TMEM256Q8N2U0 113 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 MCRIP2Q9BUT9 160 aaKnown RBP8.98□□□□□ -0.97
CLIP1-208ENST00000537004 NAGKQ9UJ70 344 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 A0A1W2PS18 150 aa8.98□□□□□ -0.97
CLIP1-208ENST00000537004 LINC01619G3V211 115 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms