RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RAB24Q969Q5 203 aa14.46□□□□□ -0.09
VPS28-206ENST00000526734 HYLS1Q96M11 299 aa14.46□□□□□ -0.09
VPS28-206ENST00000526734 NUDT3O95989 172 aa14.45□□□□□ -0.1
VPS28-206ENST00000526734 Q6AWC8 147 aa14.45□□□□□ -0.1
VPS28-206ENST00000526734 ST6GAL2Q96JF0 529 aa14.45□□□□□ -0.1
VPS28-206ENST00000526734 ACTR3CQ9C0K3 210 aaPredicted RBP14.45□□□□□ -0.1
VPS28-206ENST00000526734 TMEM167BQ9NRX6 74 aa14.45□□□□□ -0.1
VPS28-206ENST00000526734 TRGV2A0A075B6R0 118 aa14.44□□□□□ -0.1
VPS28-206ENST00000526734 TAAR5O14804 337 aa14.44□□□□□ -0.1
VPS28-206ENST00000526734 EIF3GO75821 320 aaKnown RBP eCLIP14.44□□□□□ -0.1
VPS28-206ENST00000526734 CXorf1O96002 111 aa14.44□□□□□ -0.1
VPS28-206ENST00000526734 CCL18P55774 89 aa14.44□□□□□ -0.1
VPS28-206ENST00000526734 ZNF415Q09FC8 603 aa14.44□□□□□ -0.1
VPS28-206ENST00000526734 Q6ZTI0 123 aa14.44□□□□□ -0.1
VPS28-206ENST00000526734 SUN5Q8TC36 379 aa14.44□□□□□ -0.1
VPS28-206ENST00000526734 HMGB3O15347 200 aaKnown RBP14.43□□□□□ -0.1
VPS28-206ENST00000526734 SPINK4O60575 86 aa14.43□□□□□ -0.1
VPS28-206ENST00000526734 GCHFRP30047 84 aa14.43□□□□□ -0.1
VPS28-206ENST00000526734 OR5I1Q13606 314 aa14.43□□□□□ -0.1
VPS28-206ENST00000526734 RPL7L1Q6DKI1 246 aaKnown RBP14.43□□□□□ -0.1
VPS28-206ENST00000526734 GOLT1AQ6ZVE7 132 aa14.43□□□□□ -0.1
VPS28-206ENST00000526734 C5orf17Q8NAS9 161 aa14.43□□□□□ -0.1
VPS28-206ENST00000526734 RPH3ALQ9UNE2 315 aa14.43□□□□□ -0.1
VPS28-206ENST00000526734 TRGV1A0A0A0MS02 117 aa14.42□□□□□ -0.1
VPS28-206ENST00000526734 K7EQM0 130 aa14.42□□□□□ -0.1
VPS28-206ENST00000526734 SH3BGRL3Q9H299 93 aa14.42□□□□□ -0.1
VPS28-206ENST00000526734 TMPRSS5Q9H3S3 457 aa14.42□□□□□ -0.1
VPS28-206ENST00000526734 KLF12Q9Y4X4 402 aa14.42□□□□□ -0.1
VPS28-206ENST00000526734 TRGV11A0A075B6L2 103 aa14.41□□□□□ -0.1
VPS28-206ENST00000526734 TRAV26-1A0A087WT03 109 aa14.41□□□□□ -0.1
VPS28-206ENST00000526734 FAM159AQ6UWV7 190 aa14.41□□□□□ -0.1
VPS28-206ENST00000526734 Q6ZR54 194 aa14.41□□□□□ -0.1
VPS28-206ENST00000526734 NDFIP1Q9BT67 221 aa14.41□□□□□ -0.1
VPS28-206ENST00000526734 FBLL1A6NHQ2 334 aaKnown RBP14.4□□□□□ -0.1
VPS28-206ENST00000526734 G3V3Q6 166 aa14.4□□□□□ -0.1
VPS28-206ENST00000526734 HOXA5P20719 270 aa14.4□□□□□ -0.1
VPS28-206ENST00000526734 SOHLH1Q5JUK2 328 aa14.4□□□□□ -0.1
VPS28-206ENST00000526734 TRAV21A0A0B4J279 112 aa14.39□□□□□ -0.11
VPS28-206ENST00000526734 M0R2N4 97 aa14.39□□□□□ -0.11
VPS28-206ENST00000526734 TDRG1Q3Y452 100 aa14.39□□□□□ -0.11
VPS28-206ENST00000526734 SPXQ9BT56 116 aa14.39□□□□□ -0.11
VPS28-206ENST00000526734 TP53TG3Q9ULZ0 132 aa14.39□□□□□ -0.11
VPS28-206ENST00000526734 DNAH10Q8IVF4 4471 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 IGLV2-18A0A075B6J9 118 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 CTXND1A0A1B0GTU2 59 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 ARPC5O15511 151 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 TCRAP04437 139 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 SLAQ13239 276 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 MUC21Q5SSG8 566 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 AKR1C8PQ5T2L2 129 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 TREM1Q9NP99 234 aa14.38□□□□□ -0.11
VPS28-206ENST00000526734 A0A1W2PRE2 83 aa14.37□□□□□ -0.11
VPS28-206ENST00000526734 GNG5P63218 68 aa14.37□□□□□ -0.11
VPS28-206ENST00000526734 Q6ZQT7 251 aa14.37□□□□□ -0.11
VPS28-206ENST00000526734 ZNRF2Q8NHG8 242 aa14.37□□□□□ -0.11
VPS28-206ENST00000526734 A0A0J9YY99 117 aa14.36□□□□□ -0.11
VPS28-206ENST00000526734 ZNF345Q14585 488 aa14.36□□□□□ -0.11
VPS28-206ENST00000526734 KCNS1Q96KK3 526 aa14.36□□□□□ -0.11
VPS28-206ENST00000526734 MRPL16Q9NX20 251 aaKnown RBP14.36□□□□□ -0.11
VPS28-206ENST00000526734 LINC00588Q9Y4M8 146 aa14.36□□□□□ -0.11
VPS28-206ENST00000526734 TRAV8-1A0A0A6YYK1 113 aa14.35□□□□□ -0.11
VPS28-206ENST00000526734 GGTLC3B5MD39 225 aa14.35□□□□□ -0.11
VPS28-206ENST00000526734 SUMO1P63165 101 aaKnown RBP14.35□□□□□ -0.11
VPS28-206ENST00000526734 TMEM183BQ1AE95 376 aa14.35□□□□□ -0.11
VPS28-206ENST00000526734 IQCF2Q8IXL9 164 aa14.35□□□□□ -0.11
VPS28-206ENST00000526734 TMEM183AQ8IXX5 376 aa14.35□□□□□ -0.11
VPS28-206ENST00000526734 CYB561D1Q8N8Q1 229 aa14.35□□□□□ -0.11
VPS28-206ENST00000526734 NKX6-2Q9C056 277 aaPredicted RBP14.35□□□□□ -0.11
VPS28-206ENST00000526734 EPDR1Q9UM22 224 aa14.35□□□□□ -0.11
VPS28-206ENST00000526734 SSX7Q7RTT5 188 aa14.34□□□□□ -0.11
VPS28-206ENST00000526734 TMEM75Q8N9X5 138 aa14.34□□□□□ -0.11
VPS28-206ENST00000526734 NAGKQ9UJ70 344 aa14.34□□□□□ -0.11
VPS28-206ENST00000526734 F6UZH7 168 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 RTL8CO15255 209 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 ZNF726P1Q15940 193 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 ZFP69Q49AA0 526 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 C1orf134Q5TEV5 83 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 RASL10AQ92737 203 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 TVP23CQ96ET8 276 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 VSIG2Q96IQ7 327 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 UPK3BQ9BT76 320 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 SDF2L1Q9HCN8 221 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 CYTL1Q9NRR1 136 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 MDFICQ9P1T7 246 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 PRO0255Q9UI72 69 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 NACAE9PAV3 2078 aa14.33□□□□□ -0.12
VPS28-206ENST00000526734 NBDYA0A0U1RRE5 68 aa14.32□□□□□ -0.12
VPS28-206ENST00000526734 HMSDA8MTL9 139 aa14.32□□□□□ -0.12
VPS28-206ENST00000526734 FLI1Q01543 452 aaPredicted RBP14.32□□□□□ -0.12
VPS28-206ENST00000526734 SAPCD1Q5SSQ6 148 aa14.32□□□□□ -0.12
VPS28-206ENST00000526734 KCNRGQ8N5I3 272 aa14.32□□□□□ -0.12
VPS28-206ENST00000526734 PSG8Q9UQ74 426 aa14.32□□□□□ -0.12
VPS28-206ENST00000526734 PRSS29PA6NIE9 313 aa14.31□□□□□ -0.12
VPS28-206ENST00000526734 PAX4O43316 350 aa14.31□□□□□ -0.12
VPS28-206ENST00000526734 PPT1P50897 306 aa14.31□□□□□ -0.12
VPS28-206ENST00000526734 TTC32Q5I0X7 151 aa14.31□□□□□ -0.12
VPS28-206ENST00000526734 MRPS16Q9Y3D3 137 aaKnown RBP14.31□□□□□ -0.12
VPS28-206ENST00000526734 ICOSQ9Y6W8 199 aa14.31□□□□□ -0.12
VPS28-206ENST00000526734 FRAS1Q86XX4 4008 aa14.31□□□□□ -0.12
VPS28-206ENST00000526734 A0A096LPF7 62 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms