RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 DERL1Q9BUN8 251 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 DDA1Q9BW61 102 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 SPANXDQ9BXN6 97 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 CHST6Q9GZX3 395 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 TIMM22Q9Y584 194 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 ACANP16112 2415 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 POLEQ07864 2286 aa1.87□□□□□ -2.11
CD44-223ENST00000526553 NF1P21359 2839 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 IGLV3-9A0A075B6K5 115 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 IGHV1-18A0A0C4DH31 117 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 A0A0D9SEW6 157 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 A0A0G2JND7 137 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 ARRDC5A6NEK1 342 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 GGT3PA6NGU5 568 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 C1orf196B1AJZ1 125 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 C10orf142B7Z368 130 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 GNGT2O14610 69 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 EDF1O60869 148 aaKnown RBP1.86□□□□□ -2.11
CD44-223ENST00000526553 S1PR2O95136 353 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 IFNA17P01571 189 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 SERPINE1P05121 402 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 FABP1P07148 127 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 IFI30P13284 250 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 CASP1P29466 404 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 NCS1P62166 190 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 SNRPFP62306 86 aaKnown RBP1.86□□□□□ -2.11
CD44-223ENST00000526553 RHEBQ15382 184 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 C12orf74Q32Q52 190 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 KRTAP21-3Q3LHN1 58 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 RNASE10Q5GAN6 216 aaKnown RBP1.86□□□□□ -2.11
CD44-223ENST00000526553 C22orf39Q6P5X5 142 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 ARPINQ7Z6K5 226 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 SVBPQ8N300 66 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 CCL4L1Q8NHW4 92 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 PATE1Q8WXA2 126 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 ZHX1-C8orf76Q96EF9 292 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 HOPXQ9BPY8 73 aaPredicted RBP1.86□□□□□ -2.11
CD44-223ENST00000526553 TXNDC17Q9BRA2 123 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 OR8D2Q9GZM6 311 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 MED9Q9NWA0 146 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 CALML5Q9NZT1 146 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 NAT8Q9UHE5 227 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 DCHS2Q6V1P9 2916 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 CSMD2Q7Z408 3487 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 NUP210LQ5VU65 1888 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 MPDZO75970 2070 aa1.86□□□□□ -2.11
CD44-223ENST00000526553 FBN3Q75N90 2809 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 TMSB15BA0A087X1C1 80 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 A0A1B0GV72 72 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 BBIP1A8MTZ0 92 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 H3BRN7 92 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 J3QR89 54 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 PDCD5O14737 125 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 IFNGP01579 166 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 IGKV1-5P01602 117 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 C1QBP02746 253 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 CSN2P05814 226 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 C8GP07360 202 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 OR4E1P0C645 316 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 SPI1P17947 270 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 PPIBP23284 216 aaKnown RBP1.85□□□□□ -2.11
CD44-223ENST00000526553 SDC4P31431 198 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 EVX1P49640 407 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 RUNX1Q01196 453 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 POU6F1Q14863 301 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 TRIQKQ629K1 86 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 FAM173BQ6P4H8 233 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 DCUN1D2Q6PH85 259 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 HAGHLQ6PII5 290 aaPredicted RBP1.85□□□□□ -2.11
CD44-223ENST00000526553 PDZD9Q8IXQ8 264 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 TCTE3Q8IZS6 198 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 DEFB106AQ8N104 65 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 PXT1Q8NFP0 134 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 FDCSPQ8NFU4 85 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 OR13D1Q8NGV5 346 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 OR5H6Q8NGV6 325 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 OR10X1Q8NGY0 326 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 GNPDA2Q8TDQ7 276 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 ZNF431Q8TF32 576 aaPredicted RBP1.85□□□□□ -2.11
CD44-223ENST00000526553 ISOC1Q96CN7 298 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 TTTY12Q9BZ98 90 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 C11orf68Q9H3H3 251 aaKnown RBP1.85□□□□□ -2.11
CD44-223ENST00000526553 TRABDQ9H4I3 376 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 TPT1P8Q9HAU6 139 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 CACYBPQ9HB71 228 aaKnown RBP1.85□□□□□ -2.11
CD44-223ENST00000526553 LYRM2Q9NU23 88 aaPredicted RBP1.85□□□□□ -2.11
CD44-223ENST00000526553 TMEM106BQ9NUM4 274 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 GNG8Q9UK08 70 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 HS3ST2Q9Y278 367 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 V9GYS6 101 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 JMJD1CQ15652 2540 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 CSPG4Q6UVK1 2322 aa1.85□□□□□ -2.11
CD44-223ENST00000526553 SNRNP200O75643 2136 aaKnown RBP1.85□□□□□ -2.11
CD44-223ENST00000526553 HEATR5AQ86XA9 2040 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 A0A1B0GVG6 124 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 TMEM218A2RU14 115 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 FAM159BA6NKW6 160 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 J3QQQ9 107 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 K7ERU9 68 aa1.84□□□□□ -2.11
CD44-223ENST00000526553 M0R233 179 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms