RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 J3KRW8 73 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 CRISP2P16562 243 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 TAGLN2P37802 199 aaKnown RBP7.29□□□□□ -1.24
VPS28-204ENST00000526054 SUMO1P63165 101 aaKnown RBP7.29□□□□□ -1.24
VPS28-204ENST00000526054 GNG5P63218 68 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 CCL20P78556 96 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 RRN3P1Q2M238 152 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 GFI1BQ5VTD9 330 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 MANBALQ9NQG1 85 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 GNG13Q9P2W3 67 aa7.29□□□□□ -1.24
VPS28-204ENST00000526054 YTHDF2Q9Y5A9 579 aaKnown RBP7.29□□□□□ -1.24
VPS28-204ENST00000526054 C7orf71A4D174 169 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 TMEM189A5PLL7 270 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 FBLL1A6NHQ2 334 aaKnown RBP7.28□□□□□ -1.24
VPS28-204ENST00000526054 FAM74A7A6NL05 159 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 KLLNB2CW77 178 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 IGLL5B9A064 214 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 H7BYZ3 331 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 TCRAP04437 139 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 GPX1P07203 203 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 CYB561D1Q8N8Q1 229 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 Q8TAT8 98 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 FAM19A4Q96LR4 140 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 FAM210AQ96ND0 272 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 LINC01587Q99440 93 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 TCEAL7Q9BRU2 100 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 NIPSNAP3BQ9BS92 247 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 ATG101Q9BSB4 218 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 NDFIP1Q9BT67 221 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 EPDR1Q9UM22 224 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 LENEPQ9Y5L5 61 aa7.28□□□□□ -1.24
VPS28-204ENST00000526054 RYR1P21817 5038 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 TRAV12-3A0A0B4J271 114 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 LOC102723971A0A1B0GUV8 181 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 RBFOX3A6NFN3 312 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 F6UZH7 168 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 RBMY1A1P0DJD3 496 aaKnown RBP7.27□□□□□ -1.25
VPS28-204ENST00000526054 RBMY1CP0DJD4 496 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 BCL2P10415 239 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 TAS2R60P59551 318 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 KIR3DS1Q14943 382 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 PEA15Q15121 130 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 RBMY1FQ15415 496 aaKnown RBP7.27□□□□□ -1.25
VPS28-204ENST00000526054 TOR2AQ5JU69 321 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 CST9LP1Q5W188 147 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 UQCC3Q6UW78 93 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 SLC7A5P1Q8MH63 180 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 EIF4E3Q8N5X7 224 aaKnown RBP7.27□□□□□ -1.25
VPS28-204ENST00000526054 ZFAND2AQ8N6M9 145 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 TMEM75Q8N9X5 138 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 HIST1H2BAQ96A08 127 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 EIF5A2Q9GZV4 153 aaKnown RBP7.27□□□□□ -1.25
VPS28-204ENST00000526054 VAX2Q9UIW0 290 aa7.27□□□□□ -1.25
VPS28-204ENST00000526054 KIAA1109Q2LD37 5005 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 TRAV8-1A0A0A6YYK1 113 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 TRAV10A0A0B4J240 114 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 TEX48A0A1B0GUV7 120 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 ZNF705GA8MUZ8 300 aaPredicted RBP7.26□□□□□ -1.25
VPS28-204ENST00000526054 PEX7O00628 323 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 PAGE4O60829 102 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 RNASE4P34096 147 aaKnown RBP7.26□□□□□ -1.25
VPS28-204ENST00000526054 BTN1A1Q13410 526 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 ZNF506Q5JVG8 444 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 Q6ZTC4 211 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 CCDC28AQ8IWP9 274 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 PYGO2Q9BRQ0 406 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 SMDT1Q9H4I9 107 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 APLNQ9ULZ1 77 aa7.26□□□□□ -1.25
VPS28-204ENST00000526054 PCLOQ9Y6V0 5065 aa7.25□□□□□ -1.25
VPS28-204ENST00000526054 HTN1P15515 57 aa7.25□□□□□ -1.25
VPS28-204ENST00000526054 EMP1P54849 157 aa7.25□□□□□ -1.25
VPS28-204ENST00000526054 FLI1Q01543 452 aaPredicted RBP7.25□□□□□ -1.25
VPS28-204ENST00000526054 MEF2BQ02080 365 aaPredicted RBP7.25□□□□□ -1.25
VPS28-204ENST00000526054 C16orf74Q96GX8 76 aa7.25□□□□□ -1.25
VPS28-204ENST00000526054 TXNDC17Q9BRA2 123 aa7.25□□□□□ -1.25
VPS28-204ENST00000526054 TREM1Q9NP99 234 aa7.25□□□□□ -1.25
VPS28-204ENST00000526054 PSG8Q9UQ74 426 aa7.25□□□□□ -1.25
VPS28-204ENST00000526054 FAT2Q9NYQ8 4349 aa7.25□□□□□ -1.25
VPS28-204ENST00000526054 DNAH2Q9P225 4427 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 PKHD1P08F94 4074 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 IGHV4-4A0A075B6R2 117 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 SPART-AS1P0CW21 52 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 AKR1C3P42330 323 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 ATP5G3P48201 142 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 UBE2G1P62253 170 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 SAPCD1Q5SSQ6 148 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 PRR9Q5T870 116 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 ZNF493Q6ZR52 646 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 PRNTQ86SH4 94 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 TMEM263Q8WUH6 116 aaKnown RBP7.24□□□□□ -1.25
VPS28-204ENST00000526054 SGK494Q96LW2 274 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 DNAH17Q9UFH2 4485 aa7.24□□□□□ -1.25
VPS28-204ENST00000526054 CBY3A6NI87 242 aa7.23□□□□□ -1.25
VPS28-204ENST00000526054 PDE6DO43924 150 aa7.23□□□□□ -1.25
VPS28-204ENST00000526054 NDUFS6O75380 124 aaKnown RBP7.23□□□□□ -1.25
VPS28-204ENST00000526054 ZNF324O75467 553 aaPredicted RBP7.23□□□□□ -1.25
VPS28-204ENST00000526054 IGLV2-11P01706 119 aa7.23□□□□□ -1.25
VPS28-204ENST00000526054 SRSF3P84103 164 aaKnown RBP7.23□□□□□ -1.25
VPS28-204ENST00000526054 FAM222AQ5U5X8 452 aa7.23□□□□□ -1.25
VPS28-204ENST00000526054 Q6AWC8 147 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms