RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 BAGE2Q86Y30 109 aa11.86□□□□□ -0.51
LSM1-204ENST00000522515 NHLRC2Q8NBF2 726 aa11.86□□□□□ -0.51
LSM1-204ENST00000522515 RBMY1A1P0DJD3 496 aaKnown RBP11.85□□□□□ -0.51
LSM1-204ENST00000522515 RBMY1CP0DJD4 496 aa11.85□□□□□ -0.51
LSM1-204ENST00000522515 RNASE4P34096 147 aaKnown RBP11.85□□□□□ -0.51
LSM1-204ENST00000522515 RBMY1FQ15415 496 aaKnown RBP11.85□□□□□ -0.51
LSM1-204ENST00000522515 DEFB135Q30KP9 77 aa11.85□□□□□ -0.51
LSM1-204ENST00000522515 CENPWQ5EE01 88 aa11.85□□□□□ -0.51
LSM1-204ENST00000522515 Q6ZQT7 251 aa11.85□□□□□ -0.51
LSM1-204ENST00000522515 TRAV12-3A0A0B4J271 114 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 TMEM183AQ8IXX5 376 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 C7orf71A4D174 169 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 PGPEP1LA6NFU8 196 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 INSP01308 110 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 IGLV2-8P01709 118 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 GNG4P50150 75 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 ZNF80P51504 273 aaPredicted RBP11.84□□□□□ -0.51
LSM1-204ENST00000522515 SMUG1Q53HV7 270 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 Q6ZWC4 215 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 C1orf158Q8N1D5 194 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 ZC2HC1AQ96GY0 325 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 SMIM7Q9BQ49 75 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 MLST8Q9BVC4 326 aa11.84□□□□□ -0.51
LSM1-204ENST00000522515 C9JCJ5 164 aa11.83□□□□□ -0.52
LSM1-204ENST00000522515 GCGP01275 180 aa11.83□□□□□ -0.52
LSM1-204ENST00000522515 UQCC3Q6UW78 93 aa11.83□□□□□ -0.52
LSM1-204ENST00000522515 COX8CQ7Z4L0 72 aa11.83□□□□□ -0.52
LSM1-204ENST00000522515 EIF4E3Q8N5X7 224 aaKnown RBP11.83□□□□□ -0.52
LSM1-204ENST00000522515 B9D2Q9BPU9 175 aa11.83□□□□□ -0.52
LSM1-204ENST00000522515 ZNF727A8MUV8 499 aa11.82□□□□□ -0.52
LSM1-204ENST00000522515 ZNF324O75467 553 aaPredicted RBP11.82□□□□□ -0.52
LSM1-204ENST00000522515 SFTA3P0C7M3 94 aa11.82□□□□□ -0.52
LSM1-204ENST00000522515 Q6AWC8 147 aa11.82□□□□□ -0.52
LSM1-204ENST00000522515 RNF183Q96D59 192 aa11.82□□□□□ -0.52
LSM1-204ENST00000522515 RCHY1Q96PM5 261 aa11.82□□□□□ -0.52
LSM1-204ENST00000522515 RETNQ9HD89 108 aa11.82□□□□□ -0.52
LSM1-204ENST00000522515 IGHV3OR16-12A0A075B7B8 117 aa11.81□□□□□ -0.52
LSM1-204ENST00000522515 CRIP1P50238 77 aa11.81□□□□□ -0.52
LSM1-204ENST00000522515 SOHLH1Q5JUK2 328 aa11.81□□□□□ -0.52
LSM1-204ENST00000522515 C20orf144Q9BQM9 153 aa11.81□□□□□ -0.52
LSM1-204ENST00000522515 TM2D3Q9BRN9 247 aa11.81□□□□□ -0.52
LSM1-204ENST00000522515 NBEAL2Q6ZNJ1 2754 aa11.81□□□□□ -0.52
LSM1-204ENST00000522515 FBN3Q75N90 2809 aa11.81□□□□□ -0.52
LSM1-204ENST00000522515 ZNF705AQ6ZN79 300 aaPredicted RBP11.8□□□□□ -0.52
LSM1-204ENST00000522515 OCC1Q8TAD7 63 aa11.8□□□□□ -0.52
LSM1-204ENST00000522515 SMIM12Q96EX1 92 aa11.8□□□□□ -0.52
LSM1-204ENST00000522515 OVOL2Q9BRP0 275 aa11.8□□□□□ -0.52
LSM1-204ENST00000522515 NIPSNAP3BQ9BS92 247 aa11.8□□□□□ -0.52
LSM1-204ENST00000522515 TMEM208Q9BTX3 173 aa11.8□□□□□ -0.52
LSM1-204ENST00000522515 SPRY2O43597 315 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 PFN1P07737 140 aaKnown RBP11.79□□□□□ -0.52
LSM1-204ENST00000522515 MGST1P10620 155 aaKnown RBP11.79□□□□□ -0.52
LSM1-204ENST00000522515 LINC01587Q99440 93 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 GOLT1BQ9Y3E0 138 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 TRAV21A0A0B4J279 112 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 H7BYZ3 331 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 PRM2P04554 102 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 FAM74A3Q4VXF1 159 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 PRR27Q6MZM9 219 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 SPATA25Q9BR10 227 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 TP53TG1Q9Y2A0 90 aa11.79□□□□□ -0.52
LSM1-204ENST00000522515 TMEM218A2RU14 115 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 FABP5P3A8MUU1 101 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 K7EN84 100 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 SH2D1AO60880 128 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 OR5I1Q13606 314 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 MUC21Q5SSG8 566 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 FAM162BQ5T6X4 162 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 TMEM256Q8N2U0 113 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 OR11H2Q8NH07 326 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 C11orf21Q9P2W6 132 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 X6R8D5 127 aa11.78□□□□□ -0.52
LSM1-204ENST00000522515 PRKDCP78527 4128 aaKnown RBP11.78□□□□□ -0.52
LSM1-204ENST00000522515 HTN1P15515 57 aa11.77□□□□□ -0.53
LSM1-204ENST00000522515 TMEM241Q24JQ0 296 aa11.77□□□□□ -0.53
LSM1-204ENST00000522515 LINC01551Q86U37 167 aa11.77□□□□□ -0.53
LSM1-204ENST00000522515 SLC7A5P1Q8MH63 180 aa11.77□□□□□ -0.53
LSM1-204ENST00000522515 LY96Q9Y6Y9 160 aa11.77□□□□□ -0.53
LSM1-204ENST00000522515 ZNF705GA8MUZ8 300 aaPredicted RBP11.76□□□□□ -0.53
LSM1-204ENST00000522515 ADCYAP1P18509 176 aa11.76□□□□□ -0.53
LSM1-204ENST00000522515 PYGO2Q9BRQ0 406 aa11.76□□□□□ -0.53
LSM1-204ENST00000522515 NAT8Q9UHE5 227 aa11.76□□□□□ -0.53
LSM1-204ENST00000522515 NAGKQ9UJ70 344 aa11.76□□□□□ -0.53
LSM1-204ENST00000522515 IGHV1OR15-1A0A075B7D0 117 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 DNAH9Q9NYC9 4486 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 AZU1P20160 251 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 RPL23P62829 140 aaKnown RBP11.75□□□□□ -0.53
LSM1-204ENST00000522515 ANXA2RQ3ZCQ2 193 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 FAM159AQ6UWV7 190 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 NEU1Q99519 415 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 ZMAT4Q9H898 229 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 SDF2L1Q9HCN8 221 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 TP53TG3Q9ULZ0 132 aa11.75□□□□□ -0.53
LSM1-204ENST00000522515 IGKV3D-20A0A0C4DH25 116 aa11.74□□□□□ -0.53
LSM1-204ENST00000522515 C19orf71A6NCJ1 209 aa11.74□□□□□ -0.53
LSM1-204ENST00000522515 F8W036 122 aa11.74□□□□□ -0.53
LSM1-204ENST00000522515 M0R036 132 aa11.74□□□□□ -0.53
LSM1-204ENST00000522515 TDRG1Q3Y452 100 aa11.74□□□□□ -0.53
LSM1-204ENST00000522515 LINC00467Q9BRT7 94 aa11.74□□□□□ -0.53
LSM1-204ENST00000522515 BIN3Q9NQY0 253 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms