RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 COL5A1P20908 1838 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 VCYO14598 125 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 C22orf34Q6ZV56 151 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 TP73-AS1Q9UF72 201 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 FAM223BA6NKX1 122 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 FAM223AQ8IWN6 122 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 DLX4Q92988 240 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 BPESC1Q9GZL8 116 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 AGPAT4-IT1Q9H0P7 198 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 TRAV12-3A0A0B4J271 114 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 RHPN1-AS1Q9BWJ2 59 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 ZFHX2Q9C0A1 2572 aaPredicted RBP6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 IGLV11-55A0A075B6I3 123 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 FCN3O75636 299 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 CEND1Q8N111 149 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 OR11H6Q8NGC7 330 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 CFHR4Q92496 578 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 DUX3Q96PT4 197 aa6.59□□□□□ -1.35
LIMCH1-216ENST00000512820 NCKAP5O14513 1909 aa6.59□□□□□ -1.36
LIMCH1-216ENST00000512820 A0A087WWL8 130 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 TRAV8-2A0A0B4J237 113 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 SNCGO76070 127 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 TRBV6-1A0A0K0K1D8 114 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 ETDBQ3ZM63 59 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 SMIM2Q9BVW6 85 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 CEP192Q8TEP8 1941 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 WI2-2373I1.2A0A1W2PRP0 233 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 H3BUX3 64 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 ZNF688P0C7X2 276 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 MEIG1Q5JSS6 88 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 NPBQ8NG41 125 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 MYMXA0A1B0GTQ4 84 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 PSMB11A5LHX3 300 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 IGHV4-39P01824 125 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 CTSGP08311 255 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 SLC25A16P16260 332 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 C19orf54Q5BKX5 351 aa6.58□□□□□ -1.36
LIMCH1-216ENST00000512820 F8VRH5 84 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 GRNP28799 593 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 USMG5Q96IX5 58 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 ERG28Q9UKR5 140 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 K7ENP7 123 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 SAP30O75446 220 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 MYCNOSP40205 109 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 LOXL1Q08397 574 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 TNRC6AQ8NDV7 1962 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 ARFGEF3Q5TH69 2177 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 A0A087WX48 190 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 DUSP14O95147 198 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 CD28P10747 220 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 RUSC1-AS1Q66K80 236 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 OVOL3O00110 214 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 HLA-DRB4P13762 266 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 ANXA2RQ3ZCQ2 193 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 BOD1L2Q8IYS8 172 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 TP53TG1Q9Y2A0 90 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 TSSC4Q9Y5U2 329 aaPredicted RBP6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 HLA-DRB4X5D2U9 266 aa6.57□□□□□ -1.36
LIMCH1-216ENST00000512820 TRBV25-1A0A075B6N4 114 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 F8W1H4 67 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 NDUFS8O00217 210 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 FOXE3Q13461 319 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 ZNF876PQ49A33 203 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 Q5PR19 223 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 PRADC1Q9BSG0 188 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 TTTY13Q9BZ97 58 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 H3BMG7 143 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 LY6DQ14210 128 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 IGF2-ASQ6U949 168 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 AMTNQ6UX39 209 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 SPATA12Q7Z6I5 190 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 HTTP42858 3142 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 UBE2L6O14933 153 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 TAL2Q16559 108 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 NEGR1Q7Z3B1 354 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 Q8N976 141 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 IGHV7-81A0A0B4J1V7 117 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 TMEM262E9PQX1 116 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 C12orf74Q32Q52 190 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 ZNF493Q6ZR52 646 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 LINC01587Q99440 93 aa6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 DAZ1Q9NQZ3 744 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-216ENST00000512820 TRGV11A0A075B6L2 103 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 RBAKDNA6NC62 111 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 PRAC2D3DTV9 90 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 HCFC1P51610 2035 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 C1orf122Q6ZSJ8 110 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 COPS9Q8WXC6 57 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 DYSFO75923 2080 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 TMEM238C9JI98 176 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 CRXO43186 299 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 HOXB4P17483 251 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 ITLN2Q8WWU7 325 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 EXPH5Q8NEV8 1989 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 PLXNB1O43157 2135 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 IGHV3-73A0A0B4J1V6 119 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 IGKV3D-20A0A0C4DH25 116 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 SPRY2O43597 315 aa6.55□□□□□ -1.36
LIMCH1-216ENST00000512820 FXYD2P54710 66 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms