RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 GOSR2O14653 212 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 ZNF207O43670 478 aaKnown RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 SSNA1O43805 119 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 MED6O75586 246 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 IL4P05112 153 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 NMBP08949 121 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 PGAM2P15259 253 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 RPL7P18124 248 aaKnown RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 M6PRP20645 277 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 RND2P52198 227 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 SELENOTP62341 195 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 RAB11AP62491 216 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 CLINT1Q14677 625 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 SP6Q3SY56 376 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 C19orf35Q6ZS72 473 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 TCTE3Q8IZS6 198 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 OR8I2Q8N0Y5 310 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 C10orf126Q8N4M7 172 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 C12orf45Q8N5I9 185 aaPredicted RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 LINC00612Q8N6U2 182 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 RNASE11Q8TAA1 199 aaKnown RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 RXFP4Q8TDU9 374 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 TMEM263Q8WUH6 116 aaKnown RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 MITD1Q8WV92 249 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 PPP1R14BQ96C90 147 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 SLC35E1Q96K37 410 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 TP53RKQ96S44 253 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 LINC00467Q9BRT7 94 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 TMEM208Q9BTX3 173 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 MED28Q9H204 178 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 FNDC4Q9H6D8 234 aaPredicted RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 NAA60Q9H7X0 242 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 Q9H8V8 135 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 GPN1Q9HCN4 374 aaPredicted RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 XCL2Q9UBD3 114 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 SHPKQ9UHJ6 478 aa2.66□□□□□ -1.98
USP54-217ENST00000498213 C14orf166Q9Y224 244 aaKnown RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 MRPS16Q9Y3D3 137 aaKnown RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 YTHDF2Q9Y5A9 579 aaKnown RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 TIMM8BQ9Y5J9 83 aaPredicted RBP2.66□□□□□ -1.98
USP54-217ENST00000498213 IGKV3-7A0A075B6H7 116 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 A0A087X0K7 114 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 A0A0G2JRQ6 117 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 TRBV7-9A0A0J9YWB2 115 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 ZFP92A6NM28 416 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 KNCNA6PVL3 124 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 K7EPK0 472 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 IFNA5P01569 189 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 IGKV1-39P01597 117 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 IGKV1-5P01602 117 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 IGKV1D-39P04432 117 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 OR5AC1P0C628 307 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 PLP1P60201 277 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 IFITM2Q01629 132 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 DAZ2Q13117 558 aaKnown RBP2.65□□□□□ -1.99
USP54-217ENST00000498213 IL15RAQ13261 267 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 GAMTQ14353 236 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 GUK1Q16774 197 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 TMEM128Q5BJH2 165 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 TMEM144Q7Z5S9 345 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 LGI3Q8N145 548 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 C9orf62Q8N4C0 152 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 FAM24BQ8N5W8 94 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 ZNF680Q8NEM1 530 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 BPIFCQ8NFQ6 507 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 OR1S1Q8NH92 325 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 SLC50A1Q9BRV3 221 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 TMEM70Q9BUB7 260 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 PRR34Q9NV39 138 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 CELA1Q9UNI1 258 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 NSG2Q9Y328 171 aa2.65□□□□□ -1.99
USP54-217ENST00000498213 LPAP08519 4548 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 IGHV3OR16-13A0A075B7E8 117 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 IGHV3OR16-8A0A075B7F1 116 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 IGHV3-49A0A0A0MS15 119 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 IGHV3-21A0A0B4J1V1 117 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 IGHV3-74A0A0B4J1X5 117 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 A0A0U1RQV1 116 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 ZNF98A6NK75 572 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 CEBPZOSA8MTT3 80 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 SNURFLB1AK76 121 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 ZNF253O75346 499 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 GIPP09681 153 aaPredicted RBP2.64□□□□□ -1.99
USP54-217ENST00000498213 CDKN1BP46527 198 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 SMCO1Q147U7 214 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 TIGITQ495A1 244 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 LCE3AQ5TA76 89 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 FAM78BQ5VT40 261 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 AMTNQ6UX39 209 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 ACOT7LQ6ZUV0 252 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 LYZL2Q7Z4W2 148 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 SELENOHQ8IZQ5 122 aaKnown RBP2.64□□□□□ -1.99
USP54-217ENST00000498213 C1orf158Q8N1D5 194 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 LRTM2Q8N967 370 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 OR2T35Q8NGX2 323 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 RNASE8Q8TDE3 154 aaKnown RBP2.64□□□□□ -1.99
USP54-217ENST00000498213 DTD1Q8TEA8 209 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 GLYATL2Q8WU03 294 aa2.64□□□□□ -1.99
USP54-217ENST00000498213 GNPNAT1Q96EK6 184 aaPredicted RBP2.64□□□□□ -1.99
USP54-217ENST00000498213 MRPL53Q96EL3 112 aaKnown RBP2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms