RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 SOHLH1Q5JUK2 328 aa13.48□□□□□ -0.25
USP40-217ENST00000496298 C1orf134Q5TEV5 83 aa13.48□□□□□ -0.25
USP40-217ENST00000496298 TMED6Q8WW62 240 aa13.48□□□□□ -0.25
USP40-217ENST00000496298 AQP10Q96PS8 301 aa13.48□□□□□ -0.25
USP40-217ENST00000496298 MED28Q9H204 178 aa13.48□□□□□ -0.25
USP40-217ENST00000496298 TP53TG3Q9ULZ0 132 aa13.48□□□□□ -0.25
USP40-217ENST00000496298 NBDYA0A0U1RRE5 68 aa13.47□□□□□ -0.25
USP40-217ENST00000496298 RGS13O14921 159 aa13.47□□□□□ -0.25
USP40-217ENST00000496298 RAB2AP61019 212 aa13.47□□□□□ -0.25
USP40-217ENST00000496298 OR2G3Q8NGZ4 309 aa13.47□□□□□ -0.25
USP40-217ENST00000496298 OTORQ9NRC9 128 aa13.47□□□□□ -0.25
USP40-217ENST00000496298 TRGV2A0A075B6R0 118 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 TRGV1A0A0A0MS02 117 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 A0A0J9YY99 117 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 A0A1W2PPV4 95 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 EIF3GO75821 320 aaKnown RBP eCLIP13.46□□□□□ -0.25
USP40-217ENST00000496298 Q6AWC8 147 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 SSX7Q7RTT5 188 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 OR10G4Q8NGN3 311 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 OR10G9Q8NGN4 311 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 OR10G7Q8NGN6 311 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 ASB13Q8WXK3 278 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 VSIG2Q96IQ7 327 aa13.46□□□□□ -0.25
USP40-217ENST00000496298 DYNC1H1Q14204 4646 aaKnown RBP13.45□□□□□ -0.26
USP40-217ENST00000496298 PGPA6NDG6 321 aa13.45□□□□□ -0.26
USP40-217ENST00000496298 PSMG3Q9BT73 122 aaPredicted RBP13.45□□□□□ -0.26
USP40-217ENST00000496298 GIPP09681 153 aaPredicted RBP13.44□□□□□ -0.26
USP40-217ENST00000496298 Q5BKY6 102 aa13.44□□□□□ -0.26
USP40-217ENST00000496298 FAM74A1Q5RGS3 127 aa13.44□□□□□ -0.26
USP40-217ENST00000496298 ESRGQ1W209 222 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 CMTM2Q8TAZ6 248 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 SUN5Q8TC36 379 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 ST6GAL2Q96JF0 529 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 HYLS1Q96M11 299 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 ARPC5LQ9BPX5 153 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 UPK3BQ9BT76 320 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 Q9H8V8 135 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 DNAH11Q96DT5 4516 aa13.43□□□□□ -0.26
USP40-217ENST00000496298 STAG3L2P0CL84 134 aa13.42□□□□□ -0.26
USP40-217ENST00000496298 STAG3L3P0CL85 134 aa13.42□□□□□ -0.26
USP40-217ENST00000496298 SERF2P84101 59 aa13.42□□□□□ -0.26
USP40-217ENST00000496298 TDRG1Q3Y452 100 aa13.42□□□□□ -0.26
USP40-217ENST00000496298 HSD17B11Q8NBQ5 300 aa13.42□□□□□ -0.26
USP40-217ENST00000496298 A0A096LPF7 62 aa13.41□□□□□ -0.26
USP40-217ENST00000496298 ATP6V0CP27449 155 aa13.41□□□□□ -0.26
USP40-217ENST00000496298 CDC34P49427 236 aaPredicted RBP13.41□□□□□ -0.26
USP40-217ENST00000496298 ZNF415Q09FC8 603 aa13.41□□□□□ -0.26
USP40-217ENST00000496298 MRPL16Q9NX20 251 aaKnown RBP13.41□□□□□ -0.26
USP40-217ENST00000496298 MDFICQ9P1T7 246 aa13.41□□□□□ -0.26
USP40-217ENST00000496298 MRPS16Q9Y3D3 137 aaKnown RBP13.41□□□□□ -0.26
USP40-217ENST00000496298 HMGB3O15347 200 aaKnown RBP13.4□□□□□ -0.26
USP40-217ENST00000496298 MBP02144 154 aa13.4□□□□□ -0.26
USP40-217ENST00000496298 ARL14EPLP0DKL9 152 aa13.4□□□□□ -0.26
USP40-217ENST00000496298 MUC21Q5SSG8 566 aa13.4□□□□□ -0.26
USP40-217ENST00000496298 GOLT1AQ6ZVE7 132 aa13.4□□□□□ -0.26
USP40-217ENST00000496298 C6orf223Q8N319 242 aa13.4□□□□□ -0.26
USP40-217ENST00000496298 RAB24Q969Q5 203 aa13.4□□□□□ -0.26
USP40-217ENST00000496298 SLAQ13239 276 aa13.39□□□□□ -0.27
USP40-217ENST00000496298 FAM159AQ6UWV7 190 aa13.39□□□□□ -0.27
USP40-217ENST00000496298 RASL10AQ92737 203 aa13.39□□□□□ -0.27
USP40-217ENST00000496298 TVP23CQ96ET8 276 aa13.39□□□□□ -0.27
USP40-217ENST00000496298 SPXQ9BT56 116 aa13.39□□□□□ -0.27
USP40-217ENST00000496298 TNFSF18Q9UNG2 199 aa13.39□□□□□ -0.27
USP40-217ENST00000496298 RNF222A6NCQ9 220 aa13.38□□□□□ -0.27
USP40-217ENST00000496298 GCHFRP30047 84 aa13.38□□□□□ -0.27
USP40-217ENST00000496298 FHL2Q14192 279 aa13.38□□□□□ -0.27
USP40-217ENST00000496298 PRO0255Q9UI72 69 aa13.38□□□□□ -0.27
USP40-217ENST00000496298 TRGV11A0A075B6L2 103 aa13.37□□□□□ -0.27
USP40-217ENST00000496298 TRAV8-1A0A0A6YYK1 113 aa13.37□□□□□ -0.27
USP40-217ENST00000496298 SERTM2A0A1B0GWG4 89 aa13.37□□□□□ -0.27
USP40-217ENST00000496298 TMEM183BQ1AE95 376 aa13.37□□□□□ -0.27
USP40-217ENST00000496298 IQCF2Q8IXL9 164 aa13.37□□□□□ -0.27
USP40-217ENST00000496298 TMEM183AQ8IXX5 376 aa13.37□□□□□ -0.27
USP40-217ENST00000496298 INO80EQ8NBZ0 244 aaPredicted RBP13.37□□□□□ -0.27
USP40-217ENST00000496298 SH3BGRL3Q9H299 93 aa13.37□□□□□ -0.27
USP40-217ENST00000496298 RPH3ALQ9UNE2 315 aa13.37□□□□□ -0.27
USP40-217ENST00000496298 TRAV21A0A0B4J279 112 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 A0A1W2PPQ1 181 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 PAX4O43316 350 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 MED14OSP0DP75 135 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 CRYBA4P53673 196 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 GNG5P63218 68 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 TNP2Q05952 138 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 TTC32Q5I0X7 151 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 C5orf17Q8NAS9 161 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 KRTAP1-5Q9BYS1 174 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 TREM1Q9NP99 234 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 HHLA3Q9XRX5 114 aa13.36□□□□□ -0.27
USP40-217ENST00000496298 CXorf1O96002 111 aa13.35□□□□□ -0.27
USP40-217ENST00000496298 IGHV3-53P01767 116 aa13.35□□□□□ -0.27
USP40-217ENST00000496298 TCRAP04437 139 aa13.35□□□□□ -0.27
USP40-217ENST00000496298 RPL7L1Q6DKI1 246 aaKnown RBP13.35□□□□□ -0.27
USP40-217ENST00000496298 ACTR3CQ9C0K3 210 aaPredicted RBP13.35□□□□□ -0.27
USP40-217ENST00000496298 TMEM167BQ9NRX6 74 aa13.35□□□□□ -0.27
USP40-217ENST00000496298 PCLOQ9Y6V0 5065 aa13.34□□□□□ -0.27
USP40-217ENST00000496298 IGHV3-16A0A0C4DH30 117 aa13.34□□□□□ -0.27
USP40-217ENST00000496298 G3V3Q6 166 aa13.34□□□□□ -0.27
USP40-217ENST00000496298 BTF3P20290 206 aaKnown RBP13.34□□□□□ -0.27
USP40-217ENST00000496298 OR2T35Q8NGX2 323 aa13.34□□□□□ -0.27
USP40-217ENST00000496298 ICOSQ9Y6W8 199 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms