RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 KLLNB2CW77 178 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 M0R3E3 92 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 OR7C2O60412 319 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 LY6G6CO95867 125 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 CXorf1O96002 111 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 OR10J4P0C629 311 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 RBMY1A1P0DJD3 496 aaKnown RBP4.84□□□□□ -1.63
VPS52-219ENST00000493379 CT45A10P0DMU9 189 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 GCHFRP30047 84 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 TSPOP30536 169 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 RAB5CP51148 216 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 CD300CQ08708 224 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 FAM122CQ6P4D5 195 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 SSX7Q7RTT5 188 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 SLC51BQ86UW2 128 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 EXOC3-AS1Q8N2X6 119 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 C9orf62Q8N4C0 152 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 ZNF738Q8NE65 137 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 OR4B1Q8NGF8 309 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 OR11H2Q8NH07 326 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 RXFP4Q8TDU9 374 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 PHYHIPLQ96FC7 376 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 LINC00467Q9BRT7 94 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 NKX6-2Q9C056 277 aaPredicted RBP4.84□□□□□ -1.63
VPS52-219ENST00000493379 AGPAT4-IT1Q9H0P7 198 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 SLC35B3Q9H1N7 401 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 Q9H3A6 140 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 AAMDCQ9H7C9 122 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 RETNQ9HD89 108 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 OTORQ9NRC9 128 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 TMEM167BQ9NRX6 74 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 ZNF492Q9P255 531 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 ARL2-SNX15V9GYD0 113 aa4.84□□□□□ -1.63
VPS52-219ENST00000493379 SERTM2A0A1B0GWG4 89 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 H3BTX0 84 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 BOLA2-SMG1P6H3BVE0 249 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 ZNF324O75467 553 aaPredicted RBP4.83□□□□□ -1.64
VPS52-219ENST00000493379 SNRPCP09234 159 aaKnown RBP4.83□□□□□ -1.64
VPS52-219ENST00000493379 RBMY1CP0DJD4 496 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 ARL14EPLP0DKL9 152 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 TPT1P13693 172 aaKnown RBP4.83□□□□□ -1.64
VPS52-219ENST00000493379 CDKN1BP46527 198 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 FHITP49789 147 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 RANP62826 216 aaKnown RBP4.83□□□□□ -1.64
VPS52-219ENST00000493379 UBE2L3P68036 154 aaKnown RBP4.83□□□□□ -1.64
VPS52-219ENST00000493379 AKR1C8PQ5T2L2 129 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 TMEM256Q8N2U0 113 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 OR10J6PQ8NGY7 276 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 BLNKQ8WV28 456 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 TM2D2Q9BX73 214 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 XCL2Q9UBD3 114 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 TP53TG3Q9ULZ0 132 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 FAT2Q9NYQ8 4349 aa4.83□□□□□ -1.64
VPS52-219ENST00000493379 TMEM189A5PLL7 270 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 PGPA6NDG6 321 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 SULT1A2P50226 295 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 HIST1H1AQ02539 215 aaPredicted RBP4.82□□□□□ -1.64
VPS52-219ENST00000493379 FAM74A1Q5RGS3 127 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 EIF5AL1Q6IS14 154 aaKnown RBP4.82□□□□□ -1.64
VPS52-219ENST00000493379 COX8CQ7Z4L0 72 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 ZFAND2AQ8N6M9 145 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 VGLL1Q99990 258 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 TCEAL7Q9BRU2 100 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 ZNF471Q9BX82 626 aaPredicted RBP4.82□□□□□ -1.64
VPS52-219ENST00000493379 VPS13DQ5THJ4 4388 aa4.82□□□□□ -1.64
VPS52-219ENST00000493379 DNAH2Q9P225 4427 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 A0A0J9YWU9 116 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 PLAC8L1A1L4L8 177 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 CXorf65A6NEN9 183 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 FBLL1A6NHQ2 334 aaKnown RBP4.81□□□□□ -1.64
VPS52-219ENST00000493379 GGTLC3B5MD39 225 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 M0R2Z0 102 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 EIF3GO75821 320 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS52-219ENST00000493379 IGLV2-11P01706 119 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 CSN1S1P47710 185 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 ZNF138P52744 262 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 TAS2R60P59551 318 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 ERCC8Q13216 396 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 SPINK13Q1W4C9 94 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 ZNF493Q6ZR52 646 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 C5orf17Q8NAS9 161 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 LYPD6BQ8NI32 183 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 KRTAP4-12Q9BQ66 201 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 EPDR1Q9UM22 224 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 GOLT1BQ9Y3E0 138 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 KLF12Q9Y4X4 402 aa4.81□□□□□ -1.64
VPS52-219ENST00000493379 IGHV4-28A0A0C4DH34 117 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 TRBV6-1A0A0K0K1D8 114 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 MAP1LC3B2A6NCE7 125 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 FAM74A7A6NL05 159 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 H7BYZ3 331 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 HMGB3O15347 200 aaKnown RBP4.8□□□□□ -1.64
VPS52-219ENST00000493379 PFDN1O60925 122 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 INSP01308 110 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 IGKV3-20P01619 116 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 TCRAP04437 139 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 LEPP41159 167 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 FXYD7P58549 80 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 TDRG1Q3Y452 100 aa4.8□□□□□ -1.64
VPS52-219ENST00000493379 ZFP69Q49AA0 526 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms