RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 GPR61Q9BZJ8 451 aa11.91□□□□□ -0.5
SYNE1-227ENST00000489156 COX19Q49B96 90 aa11.9□□□□□ -0.5
SYNE1-227ENST00000489156 WFDC3Q8IUB2 231 aa11.9□□□□□ -0.5
SYNE1-227ENST00000489156 OR2D3Q8NGH3 330 aa11.9□□□□□ -0.5
SYNE1-227ENST00000489156 ASCL2Q99929 193 aa11.9□□□□□ -0.5
SYNE1-227ENST00000489156 CMYA5Q8N3K9 4069 aa11.9□□□□□ -0.5
SYNE1-227ENST00000489156 FABP5P3A8MUU1 101 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 TRGC2P03986 189 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 FOXA3P55318 350 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-227ENST00000489156 RBPMS2Q6ZRY4 209 aaKnown RBP11.89□□□□□ -0.51
SYNE1-227ENST00000489156 NEU1Q99519 415 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 SAV1Q9H4B6 383 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-227ENST00000489156 DNHD1Q96M86 4753 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 XKRY2A2RUG3 117 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 HIGD1CA8MV81 97 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 SAP30O75446 220 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 RASL11AQ6T310 242 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 NUP35Q8NFH5 326 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 DYNLRB2Q8TF09 96 aa11.89□□□□□ -0.51
SYNE1-227ENST00000489156 SH2D1AO60880 128 aa11.88□□□□□ -0.51
SYNE1-227ENST00000489156 IGLL1P15814 213 aa11.88□□□□□ -0.51
SYNE1-227ENST00000489156 TCL1AP56279 114 aa11.88□□□□□ -0.51
SYNE1-227ENST00000489156 DEFB114Q30KQ6 69 aa11.88□□□□□ -0.51
SYNE1-227ENST00000489156 TRAV25A0A0B4J276 109 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 TFPI2P48307 235 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 PRR31Q5SQ13 230 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 SORL1Q92673 2214 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 PHOX2AO14813 284 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 ZNF688P0C7X2 276 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 ZNF80P51504 273 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-227ENST00000489156 RPS20P60866 119 aaKnown RBP11.87□□□□□ -0.51
SYNE1-227ENST00000489156 HIST1H1AQ02539 215 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-227ENST00000489156 Q6AWC8 147 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 ATP5L2Q7Z4Y8 100 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 TMEM61Q8N0U2 210 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 GTSF1Q8WW33 167 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 FAM19A4Q96LR4 140 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 GNB1LQ9BYB4 327 aa11.87□□□□□ -0.51
SYNE1-227ENST00000489156 TMEM189A5PLL7 270 aa11.86□□□□□ -0.51
SYNE1-227ENST00000489156 ZNF705DP0CH99 300 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-227ENST00000489156 ZNF705BP0CI00 300 aaPredicted RBP11.86□□□□□ -0.51
SYNE1-227ENST00000489156 PSMG4Q5JS54 123 aa11.86□□□□□ -0.51
SYNE1-227ENST00000489156 ACTL10Q5JWF8 245 aa11.86□□□□□ -0.51
SYNE1-227ENST00000489156 WDR73Q6P4I2 378 aa11.86□□□□□ -0.51
SYNE1-227ENST00000489156 ZFP82Q8N141 532 aa11.86□□□□□ -0.51
SYNE1-227ENST00000489156 MCRIP2Q9BUT9 160 aaKnown RBP11.86□□□□□ -0.51
SYNE1-227ENST00000489156 MT-ND6P03923 174 aa11.85□□□□□ -0.51
SYNE1-227ENST00000489156 C9orf66Q5T8R8 295 aa11.85□□□□□ -0.51
SYNE1-227ENST00000489156 ODF3Q96PU9 254 aa11.85□□□□□ -0.51
SYNE1-227ENST00000489156 SPAG8Q99932 426 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-227ENST00000489156 TRAPPC1Q9Y5R8 145 aa11.85□□□□□ -0.51
SYNE1-227ENST00000489156 F6UB75 175 aa11.85□□□□□ -0.51
SYNE1-227ENST00000489156 CRISP2P16562 243 aa11.85□□□□□ -0.51
SYNE1-227ENST00000489156 OXLD1Q5BKU9 147 aa11.85□□□□□ -0.51
SYNE1-227ENST00000489156 APRG1Q8IVJ8 170 aa11.85□□□□□ -0.51
SYNE1-227ENST00000489156 MGAM2Q2M2H8 2515 aa11.84□□□□□ -0.51
SYNE1-227ENST00000489156 A0A0J9YX75 114 aa11.84□□□□□ -0.51
SYNE1-227ENST00000489156 LINC01559Q495D7 138 aa11.84□□□□□ -0.51
SYNE1-227ENST00000489156 CD300EQ496F6 205 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-227ENST00000489156 EBLN2Q6P2I7 272 aa11.84□□□□□ -0.51
SYNE1-227ENST00000489156 ZFAND2AQ8N6M9 145 aa11.84□□□□□ -0.51
SYNE1-227ENST00000489156 FRZBQ92765 325 aa11.84□□□□□ -0.51
SYNE1-227ENST00000489156 DUSP14O95147 198 aaKnown RBP11.83□□□□□ -0.52
SYNE1-227ENST00000489156 IGLV1-51P01701 117 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 S100A6P06703 90 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 INSL3P51460 131 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 DEFB1P60022 68 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 FOXI2Q6ZQN5 318 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 OR4C46A6NHA9 309 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 SPINK4O60575 86 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BKO60814 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HLA-DQA1P01909 254 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BJP06899 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BOP23527 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BBP33778 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BDP58876 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BCP62807 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 FABP9Q0Z7S8 132 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST2H2BEQ16778 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.83□□□□□ -0.52
SYNE1-227ENST00000489156 MRPL54Q6P161 138 aaKnown RBP11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BHQ93079 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BNQ99877 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 HIST1H2BMQ99879 126 aa11.83□□□□□ -0.52
SYNE1-227ENST00000489156 SNURFLB1AK76 121 aa11.82□□□□□ -0.52
SYNE1-227ENST00000489156 ORM1P02763 201 aa11.82□□□□□ -0.52
SYNE1-227ENST00000489156 GPX1P07203 203 aa11.82□□□□□ -0.52
SYNE1-227ENST00000489156 TRGC1P0CF51 173 aa11.82□□□□□ -0.52
SYNE1-227ENST00000489156 PGLYRP4Q96LB8 373 aa11.82□□□□□ -0.52
SYNE1-227ENST00000489156 TRAV21A0A0B4J279 112 aa11.81□□□□□ -0.52
SYNE1-227ENST00000489156 LOC105371267A0A1B0GV96 52 aa11.81□□□□□ -0.52
SYNE1-227ENST00000489156 A0A1B0GXF2 115 aa11.81□□□□□ -0.52
SYNE1-227ENST00000489156 GZMBP10144 247 aa11.81□□□□□ -0.52
SYNE1-227ENST00000489156 TMEM136Q6ZRR5 245 aa11.81□□□□□ -0.52
SYNE1-227ENST00000489156 ZNF256Q9Y2P7 627 aaPredicted RBP11.81□□□□□ -0.52
SYNE1-227ENST00000489156 A0A1B0GW15 77 aa11.8□□□□□ -0.52
SYNE1-227ENST00000489156 KLLNB2CW77 178 aa11.8□□□□□ -0.52
SYNE1-227ENST00000489156 HBBP68871 147 aa11.8□□□□□ -0.52
SYNE1-227ENST00000489156 GDF5OSQ5U4N7 250 aa11.8□□□□□ -0.52
SYNE1-227ENST00000489156 A0A1B0GUT8 65 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms