RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 NBEAQ8NFP9 2946 aa10.71□□□□□ -0.7
USP42-206ENST00000479544 B9A039 149 aa10.71□□□□□ -0.7
USP42-206ENST00000479544 HLA-DRB4P13762 266 aa10.71□□□□□ -0.7
USP42-206ENST00000479544 ZFAND6Q6FIF0 208 aa10.71□□□□□ -0.7
USP42-206ENST00000479544 ZNF833PQ6ZTB9 187 aa10.71□□□□□ -0.7
USP42-206ENST00000479544 MRAP2Q96G30 205 aa10.71□□□□□ -0.7
USP42-206ENST00000479544 HLA-DRB4X5D2U9 266 aa10.71□□□□□ -0.7
USP42-206ENST00000479544 MUC22E2RYF6 1773 aaPredicted RBP10.71□□□□□ -0.7
USP42-206ENST00000479544 POU2AF1Q16633 256 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 ZNF562Q6V9R5 426 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 Q8N7P7 452 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 Q8N976 141 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 FAM57AQ8TBR7 257 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 A0A087WWL8 130 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 H7C1H1 209 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 DTX2Q86UW9 622 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 SMPXQ9UHP9 88 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 NUP210LQ5VU65 1888 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 CEACAM4O75871 244 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 IGHG3P01860 377 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 C12orf74Q32Q52 190 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 EEF1AKMT3Q96AZ1 226 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 ORMDL2Q53FV1 153 aa10.7□□□□□ -0.7
USP42-206ENST00000479544 PRSS46E5RG02 174 aa10.69□□□□□ -0.7
USP42-206ENST00000479544 PSMG4Q5JS54 123 aa10.69□□□□□ -0.7
USP42-206ENST00000479544 CEND1Q8N111 149 aa10.69□□□□□ -0.7
USP42-206ENST00000479544 MBD6Q96DN6 1003 aa10.69□□□□□ -0.7
USP42-206ENST00000479544 IGLV3-9A0A075B6K5 115 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 RNASE1P07998 156 aaKnown RBP10.68□□□□□ -0.7
USP42-206ENST00000479544 GP9P14770 177 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 C5orf64Q2M2E5 130 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 IGHV3-73A0A0B4J1V6 119 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 VWC2LB2RUY7 222 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 LOXP28300 417 aaPredicted RBP10.68□□□□□ -0.7
USP42-206ENST00000479544 PRADC1Q9BSG0 188 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 ERG28Q9UKR5 140 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 WDFY4Q6ZS81 3184 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 IGKV1-17P01599 117 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 ZNF491Q8N8L2 437 aa10.68□□□□□ -0.7
USP42-206ENST00000479544 TRBV20-1A0A075B6N2 111 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 PLNP26678 52 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 MEIG1Q5JSS6 88 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 PTH2Q96A98 100 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 THAP8Q8NA92 274 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 LAMA1P25391 3075 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 ANKRD11Q6UB99 2663 aaPredicted RBP10.67□□□□□ -0.7
USP42-206ENST00000479544 G3V4G9 280 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 PAX1P15863 534 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 C2orf66Q6UXQ4 117 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 VCX2Q9H322 139 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 F8W1H4 67 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 C10orf126Q8N4M7 172 aa10.67□□□□□ -0.7
USP42-206ENST00000479544 ZNF672Q499Z4 452 aaPredicted RBP10.66□□□□□ -0.7
USP42-206ENST00000479544 KLHL30-AS1Q8NEE0 82 aa10.66□□□□□ -0.7
USP42-206ENST00000479544 TNFRSF14Q92956 283 aa10.66□□□□□ -0.7
USP42-206ENST00000479544 SUMO2P61956 95 aaKnown RBP10.66□□□□□ -0.7
USP42-206ENST00000479544 LYPD1Q8N2G4 141 aa10.66□□□□□ -0.7
USP42-206ENST00000479544 IGLL5B9A064 214 aa10.66□□□□□ -0.7
USP42-206ENST00000479544 J3QKU1 62 aa10.66□□□□□ -0.7
USP42-206ENST00000479544 IGLV1-44P01699 117 aa10.66□□□□□ -0.7
USP42-206ENST00000479544 A0A1B0GXF2 115 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 B5MCH6 92 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 TEX36Q5VZQ5 186 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 C1orf159Q96HA4 380 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 HIVEP2P31629 2446 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 TRAV26-1A0A087WT03 109 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 MBD3L4A6NDZ8 208 aaPredicted RBP10.65□□□□□ -0.7
USP42-206ENST00000479544 MBD3L3A6NE82 208 aaPredicted RBP10.65□□□□□ -0.7
USP42-206ENST00000479544 MBD3L5A6NJ08 208 aaPredicted RBP10.65□□□□□ -0.7
USP42-206ENST00000479544 G3V318 75 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 ID1P41134 155 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 BOD1L2Q8IYS8 172 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 MBD3L2Q8NHZ7 208 aaPredicted RBP10.65□□□□□ -0.7
USP42-206ENST00000479544 SLC50A1Q9BRV3 221 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 SS18L2Q9UHA2 77 aa10.65□□□□□ -0.7
USP42-206ENST00000479544 CTSZQ9UBR2 303 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 IGKV1D-37A0A075B6S9 117 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 TRAV21A0A0B4J279 112 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 A0A0G2JNJ9 132 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 SIGLEC15Q6ZMC9 328 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 LINC00477Q96M19 166 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 Q9UFV3 132 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 ADARB2-AS1A8MUL3 147 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 DYNAPQ8N1N2 210 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 C20orf78Q9BR46 151 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 NCOR1P1Q9H4R4 102 aa10.64□□□□□ -0.71
USP42-206ENST00000479544 AGRNO00468 2067 aa10.63□□□□□ -0.71
USP42-206ENST00000479544 EIF4EBP1Q13541 118 aaPredicted RBP10.63□□□□□ -0.71
USP42-206ENST00000479544 SPXQ9BT56 116 aa10.63□□□□□ -0.71
USP42-206ENST00000479544 MYMXA0A1B0GTQ4 84 aa10.63□□□□□ -0.71
USP42-206ENST00000479544 TMEM262E9PQX1 116 aa10.63□□□□□ -0.71
USP42-206ENST00000479544 DKK4Q9UBT3 224 aa10.63□□□□□ -0.71
USP42-206ENST00000479544 TRAV8-4A0A0B4J246 113 aa10.63□□□□□ -0.71
USP42-206ENST00000479544 A0A1W2PNU3 283 aaPredicted RBP10.63□□□□□ -0.71
USP42-206ENST00000479544 H3BRN7 92 aa10.63□□□□□ -0.71
USP42-206ENST00000479544 SP5Q6BEB4 398 aaPredicted RBP10.63□□□□□ -0.71
USP42-206ENST00000479544 Q8N8P6 123 aa10.63□□□□□ -0.71
USP42-206ENST00000479544 ZNF625Q96I27 306 aaPredicted RBP10.63□□□□□ -0.71
USP42-206ENST00000479544 HIVEP3Q5T1R4 2406 aa10.62□□□□□ -0.71
USP42-206ENST00000479544 C19orf71A6NCJ1 209 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms