RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 IGHV1OR15-1A0A075B7D0 117 aa11.26□□□□□ -0.61
COL9A3-208ENST00000469802 RGS13O14921 159 aa11.26□□□□□ -0.61
COL9A3-208ENST00000469802 RPL12P30050 165 aaKnown RBP11.26□□□□□ -0.61
COL9A3-208ENST00000469802 KHDC3LQ587J8 217 aa11.26□□□□□ -0.61
COL9A3-208ENST00000469802 TTC32Q5I0X7 151 aa11.26□□□□□ -0.61
COL9A3-208ENST00000469802 A0A096LPF7 62 aa11.25□□□□□ -0.61
COL9A3-208ENST00000469802 RANP62826 216 aaKnown RBP11.25□□□□□ -0.61
COL9A3-208ENST00000469802 ZNF266Q14584 549 aa11.25□□□□□ -0.61
COL9A3-208ENST00000469802 ST6GAL2Q96JF0 529 aa11.25□□□□□ -0.61
COL9A3-208ENST00000469802 SMIM3Q9BZL3 60 aa11.25□□□□□ -0.61
COL9A3-208ENST00000469802 A0A1W2PPQ1 181 aa11.24□□□□□ -0.61
COL9A3-208ENST00000469802 PTTG1O95997 202 aa11.24□□□□□ -0.61
COL9A3-208ENST00000469802 IFNA5P01569 189 aa11.24□□□□□ -0.61
COL9A3-208ENST00000469802 CSN1S1P47710 185 aa11.24□□□□□ -0.61
COL9A3-208ENST00000469802 WFDC1Q9HC57 220 aa11.24□□□□□ -0.61
COL9A3-208ENST00000469802 LENEPQ9Y5L5 61 aa11.24□□□□□ -0.61
COL9A3-208ENST00000469802 HSPG2P98160 4391 aa11.23□□□□□ -0.61
COL9A3-208ENST00000469802 LRP1BQ9NZR2 4599 aa11.23□□□□□ -0.61
COL9A3-208ENST00000469802 DIRC3C9JPN6 131 aa11.23□□□□□ -0.61
COL9A3-208ENST00000469802 TAS2R45P59539 299 aa11.23□□□□□ -0.61
COL9A3-208ENST00000469802 Q6AWC8 147 aa11.23□□□□□ -0.61
COL9A3-208ENST00000469802 ARPC5LQ9BPX5 153 aa11.23□□□□□ -0.61
COL9A3-208ENST00000469802 MRPL16Q9NX20 251 aaKnown RBP11.23□□□□□ -0.61
COL9A3-208ENST00000469802 BTF3P20290 206 aaKnown RBP11.22□□□□□ -0.61
COL9A3-208ENST00000469802 ZNF415Q09FC8 603 aa11.22□□□□□ -0.61
COL9A3-208ENST00000469802 SCGB1C1Q8TD33 95 aa11.22□□□□□ -0.61
COL9A3-208ENST00000469802 TMED6Q8WW62 240 aa11.22□□□□□ -0.61
COL9A3-208ENST00000469802 EIF3GO75821 320 aaKnown RBP eCLIP11.21□□□□□ -0.61
COL9A3-208ENST00000469802 OTORQ9NRC9 128 aa11.21□□□□□ -0.61
COL9A3-208ENST00000469802 ABCA13Q86UQ4 5058 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 C16orf90A8MZG2 172 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 RAB2AP61019 212 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 FHL2Q14192 279 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 MUC21Q5SSG8 566 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 PQLC2Q6ZP29 291 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 ARL6IP6Q8N6S5 226 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 MDFICQ9P1T7 246 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 PRO0255Q9UI72 69 aa11.2□□□□□ -0.62
COL9A3-208ENST00000469802 PAX4O43316 350 aa11.19□□□□□ -0.62
COL9A3-208ENST00000469802 IGHV3-53P01767 116 aa11.19□□□□□ -0.62
COL9A3-208ENST00000469802 CRYBA4P53673 196 aa11.19□□□□□ -0.62
COL9A3-208ENST00000469802 ACOT6Q3I5F7 207 aaPredicted RBP11.19□□□□□ -0.62
COL9A3-208ENST00000469802 TDRG1Q3Y452 100 aa11.19□□□□□ -0.62
COL9A3-208ENST00000469802 ALG5Q9Y673 324 aa11.19□□□□□ -0.62
COL9A3-208ENST00000469802 ICOSQ9Y6W8 199 aa11.19□□□□□ -0.62
COL9A3-208ENST00000469802 CDK2AP2O75956 126 aa11.18□□□□□ -0.62
COL9A3-208ENST00000469802 SLAQ13239 276 aa11.18□□□□□ -0.62
COL9A3-208ENST00000469802 RASL10AQ92737 203 aa11.18□□□□□ -0.62
COL9A3-208ENST00000469802 HYLS1Q96M11 299 aa11.18□□□□□ -0.62
COL9A3-208ENST00000469802 PGPA6NDG6 321 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 TMEM183BQ1AE95 376 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 FAM74A1Q5RGS3 127 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 Q6ZRN7 208 aaPredicted RBP11.17□□□□□ -0.62
COL9A3-208ENST00000469802 IQCF2Q8IXL9 164 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 TMEM183AQ8IXX5 376 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 OR10G4Q8NGN3 311 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 OR2G3Q8NGZ4 309 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 C8orf49Q96NF6 230 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 SPXQ9BT56 116 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 HHLA3Q9XRX5 114 aa11.17□□□□□ -0.62
COL9A3-208ENST00000469802 TRGV11A0A075B6L2 103 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 SIVA1O15304 175 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 LINC00315P59091 139 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 FAM159AQ6UWV7 190 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 GOLT1AQ6ZVE7 132 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 CMTM2Q8TAZ6 248 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 TVP23CQ96ET8 276 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 AQP10Q96PS8 301 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 DNAH5Q8TE73 4624 aa11.16□□□□□ -0.62
COL9A3-208ENST00000469802 APOBP04114 4563 aaKnown RBP11.16□□□□□ -0.62
COL9A3-208ENST00000469802 TRAV8-1A0A0A6YYK1 113 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 A0A1W2PPV4 95 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 NXPH4O95158 308 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 ARL14EPLP0DKL9 152 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 MRPL23Q16540 153 aaKnown RBP11.15□□□□□ -0.62
COL9A3-208ENST00000469802 RGS21Q2M5E4 152 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 SPATA12Q7Z6I5 190 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 OR10G9Q8NGN4 311 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 OR10G7Q8NGN6 311 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 ZNF479Q96JC4 524 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 PSMG3Q9BT73 122 aaPredicted RBP11.15□□□□□ -0.62
COL9A3-208ENST00000469802 KRTAP4-5Q9BYR2 181 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 RPH3ALQ9UNE2 315 aa11.15□□□□□ -0.62
COL9A3-208ENST00000469802 HMGB3O15347 200 aaKnown RBP11.14□□□□□ -0.63
COL9A3-208ENST00000469802 SFTA3P0C7M3 94 aa11.14□□□□□ -0.63
COL9A3-208ENST00000469802 STAG3L2P0CL84 134 aa11.14□□□□□ -0.63
COL9A3-208ENST00000469802 STAG3L3P0CL85 134 aa11.14□□□□□ -0.63
COL9A3-208ENST00000469802 CDC34P49427 236 aaPredicted RBP11.14□□□□□ -0.63
COL9A3-208ENST00000469802 GNG5P63218 68 aa11.14□□□□□ -0.63
COL9A3-208ENST00000469802 LYPD5Q6UWN5 251 aa11.14□□□□□ -0.63
COL9A3-208ENST00000469802 SUN5Q8TC36 379 aa11.14□□□□□ -0.63
COL9A3-208ENST00000469802 TRAV21A0A0B4J279 112 aa11.13□□□□□ -0.63
COL9A3-208ENST00000469802 TRGV4A0A0C4DH28 118 aa11.13□□□□□ -0.63
COL9A3-208ENST00000469802 IGHV3-16A0A0C4DH30 117 aa11.13□□□□□ -0.63
COL9A3-208ENST00000469802 F6UZH7 168 aa11.13□□□□□ -0.63
COL9A3-208ENST00000469802 K7EQD1 137 aa11.13□□□□□ -0.63
COL9A3-208ENST00000469802 KRTAP10-2P60368 255 aa11.13□□□□□ -0.63
COL9A3-208ENST00000469802 HSD17B11Q8NBQ5 300 aa11.13□□□□□ -0.63
COL9A3-208ENST00000469802 MED28Q9H204 178 aa11.13□□□□□ -0.63
COL9A3-208ENST00000469802 NAGKQ9UJ70 344 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms