RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 USP9XQ93008 2570 aaPredicted RBP6.85□□□□□ -1.31
SYNE1-217ENST00000466159 IGSF10Q6WRI0 2623 aa6.85□□□□□ -1.31
SYNE1-217ENST00000466159 SMAD7O15105 426 aaKnown RBP6.84□□□□□ -1.31
SYNE1-217ENST00000466159 CRIP2P52943 208 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-217ENST00000466159 BLCAPP62952 87 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 TMEM78Q5T7P6 136 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 PRSS57Q6UWY2 283 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 OR8A1Q8NGG7 326 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 RNF185Q96GF1 192 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 CSPG4Q6UVK1 2322 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 HSBP1L1C9JCN9 74 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 TCF21O43680 179 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 IGHV3-11P01762 117 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 LCNL1Q6ZST4 164 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 GLMPQ8WWB7 406 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 C16orf92Q96LL3 132 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 CNFNQ9BYD5 112 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 KLK15Q9H2R5 256 aa6.84□□□□□ -1.31
SYNE1-217ENST00000466159 IGF1P05019 195 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 NRGNQ92686 78 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 C20orf173Q96LM9 149 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 DOPEY1Q5JWR5 2465 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 NDUFS8O00217 210 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 AVPP01185 164 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 IGHG2P01859 326 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 FOXE3Q13461 319 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 C9orf47Q6ZRZ4 202 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 Q6ZVH6 145 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 SCRT2Q9NQ03 307 aa6.83□□□□□ -1.32
SYNE1-217ENST00000466159 A6NDX4 124 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 MSMBP08118 114 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 GATA1P15976 413 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-217ENST00000466159 HIST1H1AQ02539 215 aaPredicted RBP6.82□□□□□ -1.32
SYNE1-217ENST00000466159 GPHB5Q86YW7 130 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 MRPL53Q96EL3 112 aaKnown RBP6.82□□□□□ -1.32
SYNE1-217ENST00000466159 ATP6V0BQ99437 205 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 PF4V1P10720 104 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 EVI2AP22794 236 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 DEFB1P60022 68 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 RBX1P62877 108 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 SLC25A34Q6PIV7 304 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 SELENOKQ9Y6D0 94 aa6.82□□□□□ -1.32
SYNE1-217ENST00000466159 IGHV7-4-1A0A0J9YVY3 117 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 J3KRW8 73 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 HBDP02042 147 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 MPV17L2Q567V2 206 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 PRR9Q5T870 116 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 WFDC3Q8IUB2 231 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 ZNF738Q8NE65 137 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 HIF1ANQ9NWT6 349 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 NDUFA4O00483 81 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 RNASE8Q8TDE3 154 aaKnown RBP6.81□□□□□ -1.32
SYNE1-217ENST00000466159 MS4A6AQ9H2W1 248 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 ACACBO00763 2458 aa6.81□□□□□ -1.32
SYNE1-217ENST00000466159 IGKV3-7A0A075B6H7 116 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 TNFRSF6BO95407 300 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 RPL11P62913 178 aaKnown RBP6.8□□□□□ -1.32
SYNE1-217ENST00000466159 C9orf139Q6ZV77 190 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 OR4X2Q8NGF9 303 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 MAP1LC3AQ9H492 121 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 SNAI2O43623 268 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 NUDT3O95989 172 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 PPBPP02775 128 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 CACNG7P62955 275 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 USMG5Q96IX5 58 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 MYO18BQ8IUG5 2567 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 SOCS3O14543 225 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 TCTAP57738 103 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 COTL1Q14019 142 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 TM4SF20Q53R12 229 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 ORAOV1Q8WV07 137 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 IFI27L1Q96BM0 104 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 C18orf15Q96N68 181 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 NPFFR1Q9GZQ6 430 aa6.8□□□□□ -1.32
SYNE1-217ENST00000466159 TRAV26-2A0A0B4J265 109 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 B4DSR2 109 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 H3BUA1 57 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 CCL25O15444 150 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 SPRY2O43597 315 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 LGALS9BQ3B8N2 356 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 TMEM95Q3KNT9 176 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 LGALS9CQ6DKI2 356 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 F6UB75 175 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 H3BVH4 76 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 BRI3O95415 125 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 IGLV1-40P01703 118 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 COX8AP10176 69 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 EDN2P20800 178 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 LEPP41159 167 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 ZFAND2AQ8N6M9 145 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 UFC1Q9Y3C8 167 aa6.79□□□□□ -1.32
SYNE1-217ENST00000466159 SRD5A1P18405 259 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 BVES-AS1Q5T3Y7 98 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 SPANXN1Q5VSR9 72 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 RHPN1-AS1Q9BWJ2 59 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 COX11Q9Y6N1 276 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 USP9YO00507 2555 aaPredicted RBP6.78□□□□□ -1.32
SYNE1-217ENST00000466159 ZANQ9Y493 2812 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 LINC01546A6NGU7 62 aa6.78□□□□□ -1.32
SYNE1-217ENST00000466159 K7EP13 123 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms