RNA–Protein interactions for RNA: ENST00000465941.1

HOXA9-203, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 657 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-203ENST00000465941 SGK494Q96LW2 274 aa13.2□□□□□ -0.3
HOXA9-203ENST00000465941 LINC00479Q96M42 142 aa13.2□□□□□ -0.3
HOXA9-203ENST00000465941 LINC00467Q9BRT7 94 aa13.2□□□□□ -0.3
HOXA9-203ENST00000465941 TREM1Q9NP99 234 aa13.2□□□□□ -0.3
HOXA9-203ENST00000465941 MANBALQ9NQG1 85 aa13.2□□□□□ -0.3
HOXA9-203ENST00000465941 HTN1P15515 57 aa13.19□□□□□ -0.3
HOXA9-203ENST00000465941 BLOC1S1P78537 153 aa13.19□□□□□ -0.3
HOXA9-203ENST00000465941 ZNF493Q6ZR52 646 aa13.19□□□□□ -0.3
HOXA9-203ENST00000465941 NDFIP1Q9BT67 221 aa13.19□□□□□ -0.3
HOXA9-203ENST00000465941 GNG13Q9P2W3 67 aa13.19□□□□□ -0.3
HOXA9-203ENST00000465941 CXorf65A6NEN9 183 aa13.18□□□□□ -0.3
HOXA9-203ENST00000465941 EMP1P54849 157 aa13.18□□□□□ -0.3
HOXA9-203ENST00000465941 SAPCD1Q5SSQ6 148 aa13.18□□□□□ -0.3
HOXA9-203ENST00000465941 Q6AWC8 147 aa13.18□□□□□ -0.3
HOXA9-203ENST00000465941 RNASE8Q8TDE3 154 aaKnown RBP13.18□□□□□ -0.3
HOXA9-203ENST00000465941 C16orf74Q96GX8 76 aa13.18□□□□□ -0.3
HOXA9-203ENST00000465941 KLF12Q9Y4X4 402 aa13.18□□□□□ -0.3
HOXA9-203ENST00000465941 TRAV34A0A0B4J273 112 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 PLAC8L1A1L4L8 177 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 C11orf94C9JXX5 98 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 SPART-AS1P0CW21 52 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 CASC10Q5T4H9 136 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 Q6ZQT7 251 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 PRNTQ86SH4 94 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 TMEM263Q8WUH6 116 aaKnown RBP13.17□□□□□ -0.3
HOXA9-203ENST00000465941 TXNDC17Q9BRA2 123 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 DKK2Q9UBU2 259 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 CELA1Q9UNI1 258 aa13.17□□□□□ -0.3
HOXA9-203ENST00000465941 TEX48A0A1B0GUV7 120 aa13.16□□□□□ -0.3
HOXA9-203ENST00000465941 NANOS2P60321 138 aaKnown RBP13.16□□□□□ -0.3
HOXA9-203ENST00000465941 LYPD6BQ8NI32 183 aa13.16□□□□□ -0.3
HOXA9-203ENST00000465941 FMC1Q96HJ9 113 aa13.16□□□□□ -0.3
HOXA9-203ENST00000465941 TRBV6-1A0A0K0K1D8 114 aa13.15□□□□□ -0.3
HOXA9-203ENST00000465941 ANXA2RQ3ZCQ2 193 aa13.15□□□□□ -0.3
HOXA9-203ENST00000465941 FAM222AQ5U5X8 452 aa13.15□□□□□ -0.3
HOXA9-203ENST00000465941 ZFAND6Q6FIF0 208 aa13.15□□□□□ -0.3
HOXA9-203ENST00000465941 TEX261Q6UWH6 196 aa13.15□□□□□ -0.3
HOXA9-203ENST00000465941 EIF4E3Q8N5X7 224 aaKnown RBP13.15□□□□□ -0.3
HOXA9-203ENST00000465941 ZFP30Q9Y2G7 519 aa13.15□□□□□ -0.3
HOXA9-203ENST00000465941 IGHV1OR15-1A0A075B7D0 117 aa13.14□□□□□ -0.31
HOXA9-203ENST00000465941 RGS13O14921 159 aa13.14□□□□□ -0.31
HOXA9-203ENST00000465941 IFNA1P01562 189 aa13.14□□□□□ -0.31
HOXA9-203ENST00000465941 S100A9P06702 114 aaKnown RBP13.14□□□□□ -0.31
HOXA9-203ENST00000465941 TMEM183BQ1AE95 376 aa13.14□□□□□ -0.31
HOXA9-203ENST00000465941 C12orf74Q32Q52 190 aa13.14□□□□□ -0.31
HOXA9-203ENST00000465941 C2CD4CQ8TF44 421 aa13.14□□□□□ -0.31
HOXA9-203ENST00000465941 C8orf49Q96NF6 230 aa13.14□□□□□ -0.31
HOXA9-203ENST00000465941 TIMM8BQ9Y5J9 83 aaPredicted RBP13.14□□□□□ -0.31
HOXA9-203ENST00000465941 TRAV21A0A0B4J279 112 aa13.13□□□□□ -0.31
HOXA9-203ENST00000465941 SCO2A0A1W2PP80 73 aa13.13□□□□□ -0.31
HOXA9-203ENST00000465941 CBY3A6NI87 242 aa13.13□□□□□ -0.31
HOXA9-203ENST00000465941 LYRM9A8MSI8 78 aa13.13□□□□□ -0.31
HOXA9-203ENST00000465941 TAGLN2P37802 199 aaKnown RBP13.13□□□□□ -0.31
HOXA9-203ENST00000465941 UBE2G1P62253 170 aa13.13□□□□□ -0.31
HOXA9-203ENST00000465941 SMUG1Q53HV7 270 aa13.13□□□□□ -0.31
HOXA9-203ENST00000465941 Q86TA4 180 aa13.13□□□□□ -0.31
HOXA9-203ENST00000465941 BCL2P10415 239 aa13.12□□□□□ -0.31
HOXA9-203ENST00000465941 AKR1C3P42330 323 aa13.12□□□□□ -0.31
HOXA9-203ENST00000465941 MEF2BQ02080 365 aaPredicted RBP13.12□□□□□ -0.31
HOXA9-203ENST00000465941 COX8CQ7Z4L0 72 aa13.12□□□□□ -0.31
HOXA9-203ENST00000465941 ZNF680Q8NEM1 530 aa13.12□□□□□ -0.31
HOXA9-203ENST00000465941 PHLDA1Q8WV24 401 aaPredicted RBP13.12□□□□□ -0.31
HOXA9-203ENST00000465941 C11orf52Q96A22 123 aa13.12□□□□□ -0.31
HOXA9-203ENST00000465941 VAX2Q9UIW0 290 aa13.12□□□□□ -0.31
HOXA9-203ENST00000465941 NUPR2A6NF83 97 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 PDE6DO43924 150 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 GCGP01275 180 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 LTAP01374 205 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 PFN1P07737 140 aaKnown RBP13.11□□□□□ -0.31
HOXA9-203ENST00000465941 ZNF80P51504 273 aaPredicted RBP13.11□□□□□ -0.31
HOXA9-203ENST00000465941 TDRG1Q3Y452 100 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 MUC21Q5SSG8 566 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 IBA57Q5T440 356 aaKnown RBP13.11□□□□□ -0.31
HOXA9-203ENST00000465941 CEMP1Q6PRD7 247 aaPredicted RBP13.11□□□□□ -0.31
HOXA9-203ENST00000465941 FAM159AQ6UWV7 190 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 Q6ZTC4 211 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 C11orf72Q8NBR9 251 aa13.11□□□□□ -0.31
HOXA9-203ENST00000465941 DAZ2Q13117 558 aaKnown RBP13.1□□□□□ -0.31
HOXA9-203ENST00000465941 ZNF767PQ75MW2 155 aa13.1□□□□□ -0.31
HOXA9-203ENST00000465941 NOP10Q9NPE3 64 aaKnown RBP13.1□□□□□ -0.31
HOXA9-203ENST00000465941 TP53TG3Q9ULZ0 132 aa13.1□□□□□ -0.31
HOXA9-203ENST00000465941 SNURFLB1AK76 121 aa13.09□□□□□ -0.31
HOXA9-203ENST00000465941 GSN-AS1Q9NRJ2 163 aa13.09□□□□□ -0.31
HOXA9-203ENST00000465941 DNAH7Q8WXX0 4024 aa13.09□□□□□ -0.31
HOXA9-203ENST00000465941 TRAV10A0A0B4J240 114 aa13.08□□□□□ -0.32
HOXA9-203ENST00000465941 FABP5P3A8MUU1 101 aa13.08□□□□□ -0.32
HOXA9-203ENST00000465941 DAD1P61803 113 aa13.08□□□□□ -0.32
HOXA9-203ENST00000465941 TMEM183AQ8IXX5 376 aa13.08□□□□□ -0.32
HOXA9-203ENST00000465941 KCNS1Q96KK3 526 aa13.08□□□□□ -0.32
HOXA9-203ENST00000465941 RBFOX3A6NFN3 312 aa13.07□□□□□ -0.32
HOXA9-203ENST00000465941 RPL35P42766 123 aaKnown RBP13.07□□□□□ -0.32
HOXA9-203ENST00000465941 TCL1AP56279 114 aa13.07□□□□□ -0.32
HOXA9-203ENST00000465941 LINC00612Q8N6U2 182 aa13.07□□□□□ -0.32
HOXA9-203ENST00000465941 ZC2HC1AQ96GY0 325 aa13.07□□□□□ -0.32
HOXA9-203ENST00000465941 NAGKQ9UJ70 344 aa13.07□□□□□ -0.32
HOXA9-203ENST00000465941 KLK5Q9Y337 293 aaPredicted RBP13.07□□□□□ -0.32
HOXA9-203ENST00000465941 TRGV11A0A075B6L2 103 aa13.06□□□□□ -0.32
HOXA9-203ENST00000465941 DEFB130BP0DP73 79 aa13.06□□□□□ -0.32
HOXA9-203ENST00000465941 DEFB130AP0DP74 79 aa13.06□□□□□ -0.32
HOXA9-203ENST00000465941 CRIP1P50238 77 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms