RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 INAFM2P0DMQ5 153 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 SAA4P35542 130 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 IGFL3Q6UXB1 125 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 ZNF48Q96MX3 618 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 JPT2Q9H910 190 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 TICRRQ7Z2Z1 1910 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 A0A087WX48 190 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 I3L3M4 83 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 PHLDA1Q8WV24 401 aaPredicted RBP15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 PRIMA1Q86XR5 153 aa15.11■□□□□ 0.01
CCDC88B-204ENST00000463837 KAAG1Q9UBP8 84 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 ATP6V0E1O15342 81 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 SRSF2Q01130 221 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 TCF15Q12870 199 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 C8orf86Q6ZUL3 223 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 NOTCH3Q9UM47 2321 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 DKK1O94907 266 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 ATP6V0BQ99437 205 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 CEACAM8P31997 349 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 SHANK1Q9Y566 2161 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 UBE2DNLQ8IWF7 75 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 C3orf56Q8N813 242 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 PRO1854Q9UHT4 67 aa15.1■□□□□ 0.01
CCDC88B-204ENST00000463837 SHISA9B4DS77 424 aa15.09■□□□□ 0.01
CCDC88B-204ENST00000463837 H3BMG7 143 aa15.09■□□□□ 0.01
CCDC88B-204ENST00000463837 NUPR1O60356 82 aa15.09■□□□□ 0.01
CCDC88B-204ENST00000463837 C11orf53Q8IXP5 236 aa15.09■□□□□ 0.01
CCDC88B-204ENST00000463837 CREBBPQ92793 2442 aa15.09■□□□□ 0.01
CCDC88B-204ENST00000463837 FGF23Q9GZV9 251 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-204ENST00000463837 TPSG1Q9NRR2 321 aa15.09■□□□□ 0.01
CCDC88B-204ENST00000463837 C11orf1Q9H5F2 150 aa15.08■□□□□ 0.01
CCDC88B-204ENST00000463837 LAMTOR3Q9UHA4 124 aa15.08■□□□□ 0.01
CCDC88B-204ENST00000463837 CCL25O15444 150 aa15.08■□□□□ 0
CCDC88B-204ENST00000463837 DEFB121Q5J5C9 76 aa15.08■□□□□ 0
CCDC88B-204ENST00000463837 MSMBP08118 114 aa15.08■□□□□ 0
CCDC88B-204ENST00000463837 ZNF491Q8N8L2 437 aa15.08■□□□□ 0
CCDC88B-204ENST00000463837 IGF2BP2-AS1Q96M15 143 aa15.08■□□□□ 0
CCDC88B-204ENST00000463837 OVOL3O00110 214 aa15.08■□□□□ 0
CCDC88B-204ENST00000463837 DKK2Q9UBU2 259 aa15.08■□□□□ 0
CCDC88B-204ENST00000463837 C12orf74Q32Q52 190 aa15.07■□□□□ 0
CCDC88B-204ENST00000463837 AMTNQ6UX39 209 aa15.07■□□□□ 0
CCDC88B-204ENST00000463837 KLHL30-AS1Q8NEE0 82 aa15.07■□□□□ 0
CCDC88B-204ENST00000463837 RBAKDNA6NC62 111 aa15.07■□□□□ 0
CCDC88B-204ENST00000463837 NDUFA4O00483 81 aa15.07■□□□□ 0
CCDC88B-204ENST00000463837 LINC01545Q5VT33 79 aa15.07■□□□□ 0
CCDC88B-204ENST00000463837 SDHAF1A6NFY7 115 aa15.07■□□□□ 0
CCDC88B-204ENST00000463837 TDRG1Q3Y452 100 aa15.07■□□□□ 0
CCDC88B-204ENST00000463837 MRPL53Q96EL3 112 aaKnown RBP15.07■□□□□ 0
CCDC88B-204ENST00000463837 HLA-DMBP28068 263 aa15.06■□□□□ 0
CCDC88B-204ENST00000463837 AZU1P20160 251 aa15.06■□□□□ 0
CCDC88B-204ENST00000463837 NUP210Q8TEM1 1887 aaPredicted RBP15.06■□□□□ 0
CCDC88B-204ENST00000463837 C6orf226Q5I0X4 101 aa15.06■□□□□ 0
CCDC88B-204ENST00000463837 J3QKU1 62 aa15.05■□□□□ 0
CCDC88B-204ENST00000463837 CITED1Q99966 193 aa15.05■□□□□ 0
CCDC88B-204ENST00000463837 ARFGEF3Q5TH69 2177 aa15.05■□□□□ 0
CCDC88B-204ENST00000463837 FAM120AOSQ5T036 256 aa15.05■□□□□ -0
CCDC88B-204ENST00000463837 UTF1Q5T230 341 aa15.05■□□□□ -0
CCDC88B-204ENST00000463837 C9orf153Q5TBE3 101 aa15.05■□□□□ -0
CCDC88B-204ENST00000463837 SCRT2Q9NQ03 307 aa15.05■□□□□ -0
CCDC88B-204ENST00000463837 LENEPQ9Y5L5 61 aa15.04■□□□□ -0
CCDC88B-204ENST00000463837 KNCNA6PVL3 124 aa15.04■□□□□ -0
CCDC88B-204ENST00000463837 RNF223E7ERA6 249 aa15.04■□□□□ -0
CCDC88B-204ENST00000463837 FGF6P10767 208 aa15.04■□□□□ -0
CCDC88B-204ENST00000463837 ANXA2RQ3ZCQ2 193 aa15.04■□□□□ -0
CCDC88B-204ENST00000463837 PLA2G2CQ5R387 149 aa15.04■□□□□ -0
CCDC88B-204ENST00000463837 ZNF493Q6ZR52 646 aa15.04■□□□□ -0
CCDC88B-204ENST00000463837 USF3Q68DE3 2245 aa15.04■□□□□ -0
CCDC88B-204ENST00000463837 DIAPH2-AS1Q14236 149 aa15.03■□□□□ -0
CCDC88B-204ENST00000463837 UBE2E2Q96LR5 201 aa15.03■□□□□ -0
CCDC88B-204ENST00000463837 MORN5Q5VZ52 161 aa15.03■□□□□ -0
CCDC88B-204ENST00000463837 IGHV1OR15-1A0A075B7D0 117 aa15.03■□□□□ -0
CCDC88B-204ENST00000463837 GP9P14770 177 aa15.02■□□□□ -0
CCDC88B-204ENST00000463837 NBL1P41271 181 aa15.02■□□□□ -0
CCDC88B-204ENST00000463837 IFITM1P13164 125 aa15.02□□□□□ -0.01
CCDC88B-204ENST00000463837 DENND4CQ5VZ89 1909 aa15.02□□□□□ -0.01
CCDC88B-204ENST00000463837 J3QQQ9 107 aa15.01□□□□□ -0.01
CCDC88B-204ENST00000463837 LHBP01229 141 aa15.01□□□□□ -0.01
CCDC88B-204ENST00000463837 G3V318 75 aa15.01□□□□□ -0.01
CCDC88B-204ENST00000463837 PRR30Q53SZ7 412 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-204ENST00000463837 PCP2Q8IVA1 136 aa15.01□□□□□ -0.01
CCDC88B-204ENST00000463837 COL4A3Q01955 1670 aa15□□□□□ -0.01
CCDC88B-204ENST00000463837 EGR2P11161 476 aaPredicted RBP15□□□□□ -0.01
CCDC88B-204ENST00000463837 NDUFA12Q9UI09 145 aa15□□□□□ -0.01
CCDC88B-204ENST00000463837 INS-IGF2F8WCM5 200 aa15□□□□□ -0.01
CCDC88B-204ENST00000463837 C17orf77Q96MU5 243 aa15□□□□□ -0.01
CCDC88B-204ENST00000463837 RPL35AP18077 110 aaKnown RBP14.99□□□□□ -0.01
CCDC88B-204ENST00000463837 KLK9Q9UKQ9 250 aa14.99□□□□□ -0.01
CCDC88B-204ENST00000463837 SOCS3O14543 225 aa14.99□□□□□ -0.01
CCDC88B-204ENST00000463837 SYNJ2BPP57105 145 aa14.99□□□□□ -0.01
CCDC88B-204ENST00000463837 SPINK13Q1W4C9 94 aa14.99□□□□□ -0.01
CCDC88B-204ENST00000463837 IGHV1-69DA0A0B4J2H0 117 aa14.98□□□□□ -0.01
CCDC88B-204ENST00000463837 SS18Q15532 418 aa14.98□□□□□ -0.01
CCDC88B-204ENST00000463837 RHOHQ15669 191 aa14.98□□□□□ -0.01
CCDC88B-204ENST00000463837 HIGD1BQ9P298 99 aa14.98□□□□□ -0.01
CCDC88B-204ENST00000463837 SPANXCQ9NY87 97 aa14.98□□□□□ -0.01
CCDC88B-204ENST00000463837 J3QLI3 93 aa14.98□□□□□ -0.01
CCDC88B-204ENST00000463837 IGHV1-69P01742 117 aa14.98□□□□□ -0.01
CCDC88B-204ENST00000463837 DEFB131AP59861 70 aa14.97□□□□□ -0.01
CCDC88B-204ENST00000463837 LINC00173Q6ZV60 143 aa14.97□□□□□ -0.01
CCDC88B-204ENST00000463837 FAM167A-AS1Q96KT0 104 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms