RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 LAMTOR2Q9Y2Q5 125 aa11.5□□□□□ -0.57
LDLR-202ENST00000455727 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.5□□□□□ -0.573e-7■■■□□ 14.8
LDLR-202ENST00000455727 SPG11Q96JI7 2443 aa11.5□□□□□ -0.57
LDLR-202ENST00000455727 PF4V1P10720 104 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 CFHR3Q02985 330 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 RNF185Q96GF1 192 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 KLK15Q9H2R5 256 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 GOLT1BQ9Y3E0 138 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 A0A096LNJ9 63 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 GPHB5Q86YW7 130 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 OR4X2Q8NGF9 303 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 LINC00477Q96M19 166 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 NPFFR1Q9GZQ6 430 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 MSRB1Q9NZV6 116 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 C11orf21Q9P2W6 132 aa11.49□□□□□ -0.57
LDLR-202ENST00000455727 LOC389332A0A1B0GUA5 103 aa11.48□□□□□ -0.57
LDLR-202ENST00000455727 SOCS3O14543 225 aa11.48□□□□□ -0.57
LDLR-202ENST00000455727 FAM106AQ4KMX7 169 aa11.48□□□□□ -0.57
LDLR-202ENST00000455727 Q6ZS46 218 aa11.48□□□□□ -0.57
LDLR-202ENST00000455727 OVOL1O14753 267 aa11.48□□□□□ -0.57
LDLR-202ENST00000455727 TCF21O43680 179 aa11.48□□□□□ -0.57
LDLR-202ENST00000455727 NPYP01303 97 aa11.48□□□□□ -0.57
LDLR-202ENST00000455727 LINC01356Q8N9X3 169 aa11.48□□□□□ -0.57
LDLR-202ENST00000455727 LINC01546A6NGU7 62 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 HSBP1L1C9JCN9 74 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 ZNF738Q8NE65 137 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 C20orf173Q96LM9 149 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 MS4A6AQ9H2W1 248 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 IGHV4-4A0A075B6R2 117 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 J3QLI3 93 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 IGHV3-11P01762 117 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 NPSP0C0P6 89 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 TFPI2P48307 235 aa11.47□□□□□ -0.57
LDLR-202ENST00000455727 LOXL1Q08397 574 aaPredicted RBP11.47□□□□□ -0.57
LDLR-202ENST00000455727 ACACBO00763 2458 aa11.46□□□□□ -0.57
LDLR-202ENST00000455727 IGHV7-4-1A0A0J9YVY3 117 aa11.46□□□□□ -0.57
LDLR-202ENST00000455727 PRSS57Q6UWY2 283 aa11.46□□□□□ -0.57
LDLR-202ENST00000455727 A0A096LNT2 108 aa11.46□□□□□ -0.58
LDLR-202ENST00000455727 SMKR1H3BMG3 65 aa11.46□□□□□ -0.58
LDLR-202ENST00000455727 HBDP02042 147 aa11.46□□□□□ -0.58
LDLR-202ENST00000455727 NRGNQ92686 78 aa11.46□□□□□ -0.58
LDLR-202ENST00000455727 MAP1LC3AQ9H492 121 aa11.46□□□□□ -0.58
LDLR-202ENST00000455727 hDV102S1A0JD36 115 aa11.45□□□□□ -0.58
LDLR-202ENST00000455727 K7EMT4 169 aa11.45□□□□□ -0.58
LDLR-202ENST00000455727 SNAI2O43623 268 aa11.45□□□□□ -0.58
LDLR-202ENST00000455727 STPG4Q8N801 248 aa11.45□□□□□ -0.58
LDLR-202ENST00000455727 OR10J6PQ8NGY7 276 aa11.45□□□□□ -0.58
LDLR-202ENST00000455727 CELSR2Q9HCU4 2923 aa11.45□□□□□ -0.58
LDLR-202ENST00000455727 CACNG7P62955 275 aa11.44□□□□□ -0.58
LDLR-202ENST00000455727 FOXE3Q13461 319 aa11.44□□□□□ -0.58
LDLR-202ENST00000455727 DAZ1Q9NQZ3 744 aaKnown RBP11.44□□□□□ -0.58
LDLR-202ENST00000455727 TIMM8BQ9Y5J9 83 aaPredicted RBP11.44□□□□□ -0.58
LDLR-202ENST00000455727 NCR2O95944 276 aa11.44□□□□□ -0.58
LDLR-202ENST00000455727 NXT2Q9NPJ8 142 aaKnown RBP11.44□□□□□ -0.58
LDLR-202ENST00000455727 PEF1Q9UBV8 284 aaKnown RBP11.44□□□□□ -0.58
LDLR-202ENST00000455727 TRBV7-9A0A0J9YWB2 115 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 TMEM89A2RUT3 159 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 SMIM15Q7Z3B0 74 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 ZFAND2AQ8N6M9 145 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 RHPN1-AS1Q9BWJ2 59 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 H0Y8G0 127 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 TNFRSF6BO95407 300 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 COX6B1P14854 86 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 PSMB8P28062 276 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 DEFB112Q30KQ8 113 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 LGALS9BQ3B8N2 356 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 LGALS9CQ6DKI2 356 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 FAM19A4Q96LR4 140 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 SCRT2Q9NQ03 307 aa11.43□□□□□ -0.58
LDLR-202ENST00000455727 PRR9Q5T870 116 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 SLC25A34Q6PIV7 304 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 DEFB125Q8N687 156 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 DPF1Q92782 380 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 MCRIP2Q9BUT9 160 aaKnown RBP11.42□□□□□ -0.58
LDLR-202ENST00000455727 SMPXQ9UHP9 88 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 MYO18BQ8IUG5 2567 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 TRAV21A0A0B4J279 112 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 PRSS47A8MTI9 375 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 IGHV4-59P01825 116 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 TM4SF20Q53R12 229 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 LCNL1Q6ZST4 164 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 APRG1Q8IVJ8 170 aa11.42□□□□□ -0.58
LDLR-202ENST00000455727 CRYBG3Q68DQ2 2970 aa11.41□□□□□ -0.58
LDLR-202ENST00000455727 SAMD13Q5VXD3 122 aa11.41□□□□□ -0.58
LDLR-202ENST00000455727 OR8A1Q8NGG7 326 aa11.41□□□□□ -0.58
LDLR-202ENST00000455727 CSPG4Q6UVK1 2322 aa11.41□□□□□ -0.58
LDLR-202ENST00000455727 EVI2AP22794 236 aa11.41□□□□□ -0.58
LDLR-202ENST00000455727 RPL11P62913 178 aaKnown RBP11.41□□□□□ -0.58
LDLR-202ENST00000455727 Q6ZQT7 251 aa11.41□□□□□ -0.58
LDLR-202ENST00000455727 MAP1AP78559 2803 aaPredicted RBP11.4□□□□□ -0.58
LDLR-202ENST00000455727 GAS8-AS1O95177 125 aa11.4□□□□□ -0.58
LDLR-202ENST00000455727 SPANXN1Q5VSR9 72 aa11.4□□□□□ -0.58
LDLR-202ENST00000455727 IFI27L1Q96BM0 104 aa11.4□□□□□ -0.58
LDLR-202ENST00000455727 PMCHL2Q9BQD1 86 aa11.4□□□□□ -0.58
LDLR-202ENST00000455727 TGFAP01135 160 aa11.4□□□□□ -0.59
LDLR-202ENST00000455727 FCER1GP30273 86 aa11.4□□□□□ -0.59
LDLR-202ENST00000455727 HINT1P49773 126 aaPredicted RBP11.4□□□□□ -0.59
LDLR-202ENST00000455727 PRB1P04280 392 aa11.39□□□□□ -0.59
LDLR-202ENST00000455727 Q8N8P6 123 aa11.39□□□□□ -0.59
LDLR-202ENST00000455727 OR2K2Q8NGT1 345 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms