RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 Q6ZQT7 251 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 ARL6IP6Q8N6S5 226 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 MED28Q9H204 178 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 OTORQ9NRC9 128 aa8.38□□□□□ -1.07
USP40-210ENST00000454354 NBDYA0A0U1RRE5 68 aa8.37□□□□□ -1.07
USP40-210ENST00000454354 GIPP09681 153 aaPredicted RBP8.37□□□□□ -1.07
USP40-210ENST00000454354 SOHLH1Q5JUK2 328 aa8.37□□□□□ -1.07
USP40-210ENST00000454354 Q6AWC8 147 aa8.37□□□□□ -1.07
USP40-210ENST00000454354 OR10G4Q8NGN3 311 aa8.37□□□□□ -1.07
USP40-210ENST00000454354 OR10G9Q8NGN4 311 aa8.37□□□□□ -1.07
USP40-210ENST00000454354 OR10G7Q8NGN6 311 aa8.37□□□□□ -1.07
USP40-210ENST00000454354 PSMG3Q9BT73 122 aaPredicted RBP8.37□□□□□ -1.07
USP40-210ENST00000454354 TP53TG3Q9ULZ0 132 aa8.37□□□□□ -1.07
USP40-210ENST00000454354 KLF12Q9Y4X4 402 aa8.37□□□□□ -1.07
USP40-210ENST00000454354 TRGV2A0A075B6R0 118 aa8.36□□□□□ -1.07
USP40-210ENST00000454354 TRGV1A0A0A0MS02 117 aa8.36□□□□□ -1.07
USP40-210ENST00000454354 A0A0J9YY99 117 aa8.36□□□□□ -1.07
USP40-210ENST00000454354 A0A1W2PPV4 95 aa8.36□□□□□ -1.07
USP40-210ENST00000454354 EIF3GO75821 320 aaKnown RBP eCLIP8.36□□□□□ -1.07
USP40-210ENST00000454354 FAM74A1Q5RGS3 127 aa8.36□□□□□ -1.07
USP40-210ENST00000454354 C1orf134Q5TEV5 83 aa8.36□□□□□ -1.07
USP40-210ENST00000454354 ARPC5LQ9BPX5 153 aa8.36□□□□□ -1.07
USP40-210ENST00000454354 UPK3BQ9BT76 320 aa8.36□□□□□ -1.07
USP40-210ENST00000454354 PGPA6NDG6 321 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 STAG3L2P0CL84 134 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 STAG3L3P0CL85 134 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 CDC34P49427 236 aaPredicted RBP8.35□□□□□ -1.07
USP40-210ENST00000454354 ZNF415Q09FC8 603 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 SSX7Q7RTT5 188 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 HSD17B11Q8NBQ5 300 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 CMTM2Q8TAZ6 248 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 SUN5Q8TC36 379 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 VSIG2Q96IQ7 327 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 ST6GAL2Q96JF0 529 aa8.35□□□□□ -1.07
USP40-210ENST00000454354 MBP02144 154 aa8.34□□□□□ -1.07
USP40-210ENST00000454354 ARL14EPLP0DKL9 152 aa8.34□□□□□ -1.07
USP40-210ENST00000454354 ATP6V0CP27449 155 aa8.34□□□□□ -1.07
USP40-210ENST00000454354 SERF2P84101 59 aa8.34□□□□□ -1.07
USP40-210ENST00000454354 TDRG1Q3Y452 100 aa8.34□□□□□ -1.07
USP40-210ENST00000454354 Q5BKY6 102 aa8.34□□□□□ -1.07
USP40-210ENST00000454354 HYLS1Q96M11 299 aa8.34□□□□□ -1.07
USP40-210ENST00000454354 MRPL16Q9NX20 251 aaKnown RBP8.34□□□□□ -1.07
USP40-210ENST00000454354 MRPS16Q9Y3D3 137 aaKnown RBP8.34□□□□□ -1.07
USP40-210ENST00000454354 A0A096LPF7 62 aa8.33□□□□□ -1.08
USP40-210ENST00000454354 RNF222A6NCQ9 220 aa8.33□□□□□ -1.08
USP40-210ENST00000454354 ESRGQ1W209 222 aa8.33□□□□□ -1.08
USP40-210ENST00000454354 MUC21Q5SSG8 566 aa8.33□□□□□ -1.08
USP40-210ENST00000454354 GOLT1AQ6ZVE7 132 aa8.33□□□□□ -1.08
USP40-210ENST00000454354 Q9H8V8 135 aa8.33□□□□□ -1.08
USP40-210ENST00000454354 TRGV11A0A075B6L2 103 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 SERTM2A0A1B0GWG4 89 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 HMGB3O15347 200 aaKnown RBP8.32□□□□□ -1.08
USP40-210ENST00000454354 FAM159AQ6UWV7 190 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 C6orf223Q8N319 242 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 INO80EQ8NBZ0 244 aaPredicted RBP8.32□□□□□ -1.08
USP40-210ENST00000454354 RAB24Q969Q5 203 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 TVP23CQ96ET8 276 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 SPXQ9BT56 116 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 SH3BGRL3Q9H299 93 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 RPH3ALQ9UNE2 315 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 TNFSF18Q9UNG2 199 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 RYR1P21817 5038 aa8.32□□□□□ -1.08
USP40-210ENST00000454354 TRAV8-1A0A0A6YYK1 113 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 A0A1W2PPQ1 181 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 G3V3Q6 166 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 GCHFRP30047 84 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 GNG5P63218 68 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 SLAQ13239 276 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 TMEM183BQ1AE95 376 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 RGS21Q2M5E4 152 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 TTC32Q5I0X7 151 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 TMEM183AQ8IXX5 376 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 C5orf17Q8NAS9 161 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 RASL10AQ92737 203 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 KRTAP1-5Q9BYS1 174 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 MDFICQ9P1T7 246 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 PRO0255Q9UI72 69 aa8.31□□□□□ -1.08
USP40-210ENST00000454354 FXYD6-FXYD2A0A087WZ82 144 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 TRAV21A0A0B4J279 112 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 PAX4O43316 350 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 CXorf1O96002 111 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 IGHV3-53P01767 116 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 TCRAP04437 139 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 CRYBA4P53673 196 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 FHL2Q14192 279 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 RPL7L1Q6DKI1 246 aaKnown RBP8.3□□□□□ -1.08
USP40-210ENST00000454354 OR2T35Q8NGX2 323 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 TREM1Q9NP99 234 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 TMEM167BQ9NRX6 74 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 ICOSQ9Y6W8 199 aa8.3□□□□□ -1.08
USP40-210ENST00000454354 PCLOQ9Y6V0 5065 aa8.29□□□□□ -1.08
USP40-210ENST00000454354 BORCS7-ASMTA0A0B4J1R7 106 aa8.29□□□□□ -1.08
USP40-210ENST00000454354 GGTLC3B5MD39 225 aa8.29□□□□□ -1.08
USP40-210ENST00000454354 F6UZH7 168 aa8.29□□□□□ -1.08
USP40-210ENST00000454354 MED14OSP0DP75 135 aa8.29□□□□□ -1.08
USP40-210ENST00000454354 BTF3P20290 206 aaKnown RBP8.29□□□□□ -1.08
USP40-210ENST00000454354 TNP2Q05952 138 aa8.29□□□□□ -1.08
USP40-210ENST00000454354 IQCF2Q8IXL9 164 aa8.29□□□□□ -1.08
USP40-210ENST00000454354 ACTR3CQ9C0K3 210 aaPredicted RBP8.29□□□□□ -1.08
USP40-210ENST00000454354 LRP1BQ9NZR2 4599 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms