RNA–Protein interactions for RNA: ENST00000450867.1

COL3A1-203, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL3A1, Length 268 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-203ENST00000450867 Q6ZTC4 211 aa10.24□□□□□ -0.77
COL3A1-203ENST00000450867 CCDC28AQ8IWP9 274 aa10.24□□□□□ -0.77
COL3A1-203ENST00000450867 IQCF2Q8IXL9 164 aa10.24□□□□□ -0.77
COL3A1-203ENST00000450867 CYB561D1Q8N8Q1 229 aa10.24□□□□□ -0.77
COL3A1-203ENST00000450867 TMEM75Q8N9X5 138 aa10.24□□□□□ -0.77
COL3A1-203ENST00000450867 TCEAL7Q9BRU2 100 aa10.24□□□□□ -0.77
COL3A1-203ENST00000450867 ATG101Q9BSB4 218 aa10.24□□□□□ -0.77
COL3A1-203ENST00000450867 SACSQ9NZJ4 4579 aa10.24□□□□□ -0.77
COL3A1-203ENST00000450867 TRAV8-1A0A0A6YYK1 113 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 TRAV10A0A0B4J240 114 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 J3KRW8 73 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 K7EQM0 130 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 RNASE4P34096 147 aaKnown RBP10.23□□□□□ -0.77
COL3A1-203ENST00000450867 SULT1A2P50226 295 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 ANXA2RQ3ZCQ2 193 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 SFT2D1Q8WV19 159 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 TVP23CQ96ET8 276 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 RPH3ALQ9UNE2 315 aa10.23□□□□□ -0.77
COL3A1-203ENST00000450867 KLK5Q9Y337 293 aaPredicted RBP10.23□□□□□ -0.77
COL3A1-203ENST00000450867 H2AFB1P0C5Y9 115 aa10.22□□□□□ -0.77
COL3A1-203ENST00000450867 EMP1P54849 157 aa10.22□□□□□ -0.77
COL3A1-203ENST00000450867 UBE2G2P60604 165 aa10.22□□□□□ -0.77
COL3A1-203ENST00000450867 EIF4E3Q8N5X7 224 aaKnown RBP10.22□□□□□ -0.77
COL3A1-203ENST00000450867 HIST1H2BAQ96A08 127 aa10.22□□□□□ -0.77
COL3A1-203ENST00000450867 TIMM8BQ9Y5J9 83 aaPredicted RBP10.22□□□□□ -0.77
COL3A1-203ENST00000450867 PPT1P50897 306 aa10.21□□□□□ -0.77
COL3A1-203ENST00000450867 TCTAP57738 103 aa10.21□□□□□ -0.77
COL3A1-203ENST00000450867 FLI1Q01543 452 aaPredicted RBP10.21□□□□□ -0.77
COL3A1-203ENST00000450867 LINC00612Q8N6U2 182 aa10.21□□□□□ -0.77
COL3A1-203ENST00000450867 C11orf72Q8NBR9 251 aa10.21□□□□□ -0.77
COL3A1-203ENST00000450867 ZNF680Q8NEM1 530 aa10.21□□□□□ -0.77
COL3A1-203ENST00000450867 RYR2Q92736 4967 aa10.21□□□□□ -0.78
COL3A1-203ENST00000450867 IGHV1OR15-1A0A075B7D0 117 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 LCE6AA0A183 80 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 PEX7O00628 323 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 DAZ2Q13117 558 aaKnown RBP10.2□□□□□ -0.78
COL3A1-203ENST00000450867 TDRG1Q3Y452 100 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 IBA57Q5T440 356 aaKnown RBP10.2□□□□□ -0.78
COL3A1-203ENST00000450867 Q6ZQT7 251 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 C2CD4CQ8TF44 421 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 TREM1Q9NP99 234 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 PSG8Q9UQ74 426 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 KLF12Q9Y4X4 402 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 RYR3Q15413 4870 aa10.2□□□□□ -0.78
COL3A1-203ENST00000450867 TRBV6-1A0A0K0K1D8 114 aa10.19□□□□□ -0.78
COL3A1-203ENST00000450867 IFNA7P01567 189 aa10.19□□□□□ -0.78
COL3A1-203ENST00000450867 HTN1P15515 57 aa10.19□□□□□ -0.78
COL3A1-203ENST00000450867 ZNF767PQ75MW2 155 aa10.19□□□□□ -0.78
COL3A1-203ENST00000450867 NDFIP1Q9BT67 221 aa10.19□□□□□ -0.78
COL3A1-203ENST00000450867 TP53TG3Q9ULZ0 132 aa10.19□□□□□ -0.78
COL3A1-203ENST00000450867 MUC4Q99102 2169 aa10.19□□□□□ -0.78
COL3A1-203ENST00000450867 DEFB131BA0A096LNP1 70 aa10.18□□□□□ -0.78
COL3A1-203ENST00000450867 F6UZH7 168 aa10.18□□□□□ -0.78
COL3A1-203ENST00000450867 RGS13O14921 159 aa10.18□□□□□ -0.78
COL3A1-203ENST00000450867 PAGE4O60829 102 aa10.18□□□□□ -0.78
COL3A1-203ENST00000450867 DAD1P61803 113 aa10.18□□□□□ -0.78
COL3A1-203ENST00000450867 SAPCD1Q5SSQ6 148 aa10.18□□□□□ -0.78
COL3A1-203ENST00000450867 COX8CQ7Z4L0 72 aa10.18□□□□□ -0.78
COL3A1-203ENST00000450867 FAM210BQ96KR6 192 aa10.18□□□□□ -0.78
COL3A1-203ENST00000450867 TRAV21A0A0B4J279 112 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 SNURFLB1AK76 121 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 ATP5G3P48201 142 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 NKX2-5P52952 324 aaPredicted RBP10.17□□□□□ -0.78
COL3A1-203ENST00000450867 TCL1AP56279 114 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 CST9LP1Q5W188 147 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 Q86TA4 180 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 SGK494Q96LW2 274 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 LINC00479Q96M42 142 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 C18orf15Q96N68 181 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 NOP10Q9NPE3 64 aaKnown RBP10.17□□□□□ -0.78
COL3A1-203ENST00000450867 MANBALQ9NQG1 85 aa10.17□□□□□ -0.78
COL3A1-203ENST00000450867 VPS13DQ5THJ4 4388 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 CBY3A6NI87 242 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 TEX46H3BTG2 121 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 CCL20P78556 96 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 FMC1Q96HJ9 113 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 C8orf49Q96NF6 230 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 TXNDC17Q9BRA2 123 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 APLNQ9ULZ1 77 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 DNAH6Q9C0G6 4158 aa10.16□□□□□ -0.78
COL3A1-203ENST00000450867 TRAV34A0A0B4J273 112 aa10.15□□□□□ -0.78
COL3A1-203ENST00000450867 A0A1B0GV50 99 aa10.15□□□□□ -0.78
COL3A1-203ENST00000450867 PFN1P07737 140 aaKnown RBP10.15□□□□□ -0.78
COL3A1-203ENST00000450867 ZNF80P51504 273 aaPredicted RBP10.15□□□□□ -0.78
COL3A1-203ENST00000450867 SMUG1Q53HV7 270 aa10.15□□□□□ -0.78
COL3A1-203ENST00000450867 FAM159AQ6UWV7 190 aa10.15□□□□□ -0.78
COL3A1-203ENST00000450867 PRNTQ86SH4 94 aa10.15□□□□□ -0.78
COL3A1-203ENST00000450867 GSN-AS1Q9NRJ2 163 aa10.15□□□□□ -0.78
COL3A1-203ENST00000450867 ZFP30Q9Y2G7 519 aa10.15□□□□□ -0.78
COL3A1-203ENST00000450867 TRGV11A0A075B6L2 103 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 IGHV4-4A0A075B6R2 117 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 SPINK4O60575 86 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 GCGP01275 180 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 LTAP01374 205 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 ATP5G1P05496 136 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 S100A9P06702 114 aaKnown RBP10.14□□□□□ -0.79
COL3A1-203ENST00000450867 DEFB130BP0DP73 79 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 DEFB130AP0DP74 79 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 ZNF415Q09FC8 603 aa10.14□□□□□ -0.79
COL3A1-203ENST00000450867 TMEM183BQ1AE95 376 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms