RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ST6GAL2Q96JF0 529 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 FAM19A4Q96LR4 140 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 PAXXQ9BUH6 204 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 PARD6GQ9BYG4 376 aaPredicted RBP4.91□□□□□ -1.62
VPS41-208ENST00000448833 TMPRSS5Q9H3S3 457 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 GSN-AS1Q9NRJ2 163 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 PTTG2Q9NZH5 202 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 ZNF492Q9P255 531 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 PRO0255Q9UI72 69 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 LENEPQ9Y5L5 61 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 ICOSQ9Y6W8 199 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 IGHV1OR15-1A0A075B7D0 117 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 M0R3E3 92 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 SIVA1O15304 175 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 OR7C2O60412 319 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 SPINK4O60575 86 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 IFNA5P01569 189 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 PYYP10082 97 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 ZNF415Q09FC8 603 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 ERCC8Q13216 396 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 MRPL23Q16540 153 aaKnown RBP4.9□□□□□ -1.63
VPS41-208ENST00000448833 FAM122CQ6P4D5 195 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 NFE4Q86UQ8 179 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 ZNF575Q86XF7 245 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 EXOC3-AS1Q8N2X6 119 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 C11orf72Q8NBR9 251 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 THAP6Q8TBB0 222 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 SCGB1C1Q8TD33 95 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 SPXQ9BT56 116 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 SLC25A2Q9BXI2 301 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 KRTAP4-7Q9BYR0 210 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 WDR61Q9GZS3 305 aaKnown RBP4.9□□□□□ -1.63
VPS41-208ENST00000448833 HHLA3Q9XRX5 114 aa4.9□□□□□ -1.63
VPS41-208ENST00000448833 RYR1P21817 5038 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 A0A096LPF7 62 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 ORM1P02763 201 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 DEFA1P59665 94 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 DEFA3P59666 94 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 RANP62826 216 aaKnown RBP4.89□□□□□ -1.63
VPS41-208ENST00000448833 CD300CQ08708 224 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 BTN1A1Q13410 526 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 ZNF266Q14584 549 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 KHDC3LQ587J8 217 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 FAM159AQ6UWV7 190 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 NEGR1Q7Z3B1 354 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 SH2D6Q7Z4S9 175 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 TMED6Q8WW62 240 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 VSIG2Q96IQ7 327 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 FAM167A-AS1Q96KT0 104 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 VGLL1Q99990 258 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 KLF12Q9Y4X4 402 aa4.89□□□□□ -1.63
VPS41-208ENST00000448833 TRGV11A0A075B6L2 103 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 TRGV4A0A0C4DH28 118 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 A0A1W2PPV4 95 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 INMT-MINDY4F8WBC2 141 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 CIDEAO60543 219 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 UPK1BO75841 260 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 PRB4P10163 310 aaPredicted RBP4.88□□□□□ -1.63
VPS41-208ENST00000448833 LRRC37A5PQ49AS3 106 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 MIR17HGQ75NE6 70 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 SPATA12Q7Z6I5 190 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 ZFAND2AQ8N6M9 145 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 CMTM2Q8TAZ6 248 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 PCNPQ8WW12 178 aaKnown RBP4.88□□□□□ -1.63
VPS41-208ENST00000448833 RASL10AQ92737 203 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 FXYD5Q96DB9 178 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 ATP5SQ99766 215 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 TP53TG3Q9ULZ0 132 aa4.88□□□□□ -1.63
VPS41-208ENST00000448833 IGKV2-40A0A087WW87 121 aaPredicted RBP4.87□□□□□ -1.63
VPS41-208ENST00000448833 DIRC3C9JPN6 131 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 K7EQM0 130 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 SSNA1O43805 119 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 IGKV2D-40P01614 121 aaPredicted RBP4.87□□□□□ -1.63
VPS41-208ENST00000448833 OR10J4P0C629 311 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 EVI2AP22794 236 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 CRYBA4P53673 196 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 ERVFC1-1P60608 527 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 UBE2L3P68036 154 aaKnown RBP4.87□□□□□ -1.63
VPS41-208ENST00000448833 ACOT6Q3I5F7 207 aaPredicted RBP4.87□□□□□ -1.63
VPS41-208ENST00000448833 GCSAMLQ5JQS6 135 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 FFAR4Q5NUL3 377 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 Q6AWC8 147 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 LYPD5Q6UWN5 251 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 PQLC2Q6ZP29 291 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 MAPKAPK5-AS1Q8N8E1 139 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 OR10G4Q8NGN3 311 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 PPP1R1CQ8WVI7 109 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 KCNS1Q96KK3 526 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 TXNDC17Q9BRA2 123 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 MARVELD1Q9BSK0 173 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 SH3BGRL3Q9H299 93 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 OTORQ9NRC9 128 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 OR5AC2Q9NZP5 309 aa4.87□□□□□ -1.63
VPS41-208ENST00000448833 TRAV21A0A0B4J279 112 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 SERTM2A0A1B0GWG4 89 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 C9JCJ5 164 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 H3BS24 57 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 NXPH4O95158 308 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 SIX6O95475 246 aa4.86□□□□□ -1.63
VPS41-208ENST00000448833 MPC2O95563 127 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 134.9 ms