RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ARPC5LQ9BPX5 153 aa10.71□□□□□ -0.69
LIMS3-201ENST00000437679 GSN-AS1Q9NRJ2 163 aa10.71□□□□□ -0.69
LIMS3-201ENST00000437679 AKR1C8PQ5T2L2 129 aa10.7□□□□□ -0.7
LIMS3-201ENST00000437679 IQCF2Q8IXL9 164 aa10.7□□□□□ -0.7
LIMS3-201ENST00000437679 SUN5Q8TC36 379 aa10.7□□□□□ -0.7
LIMS3-201ENST00000437679 DNAH6Q9C0G6 4158 aa10.69□□□□□ -0.7
LIMS3-201ENST00000437679 CTXND1A0A1B0GTU2 59 aa10.69□□□□□ -0.7
LIMS3-201ENST00000437679 SERTM2A0A1B0GWG4 89 aa10.69□□□□□ -0.7
LIMS3-201ENST00000437679 GNG5P63218 68 aa10.69□□□□□ -0.7
LIMS3-201ENST00000437679 IBA57Q5T440 356 aaKnown RBP10.69□□□□□ -0.7
LIMS3-201ENST00000437679 C5orf17Q8NAS9 161 aa10.69□□□□□ -0.7
LIMS3-201ENST00000437679 C11orf72Q8NBR9 251 aa10.69□□□□□ -0.7
LIMS3-201ENST00000437679 CYTL1Q9NRR1 136 aa10.69□□□□□ -0.7
LIMS3-201ENST00000437679 K7EQM0 130 aa10.68□□□□□ -0.7
LIMS3-201ENST00000437679 TCL1AP56279 114 aa10.68□□□□□ -0.7
LIMS3-201ENST00000437679 OR5I1Q13606 314 aa10.68□□□□□ -0.7
LIMS3-201ENST00000437679 ZNF345Q14585 488 aa10.68□□□□□ -0.7
LIMS3-201ENST00000437679 Q6ZQT7 251 aa10.68□□□□□ -0.7
LIMS3-201ENST00000437679 Q6ZTI0 123 aa10.68□□□□□ -0.7
LIMS3-201ENST00000437679 SSX7Q7RTT5 188 aa10.68□□□□□ -0.7
LIMS3-201ENST00000437679 TRGV2A0A075B6R0 118 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 TRGV1A0A0A0MS02 117 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 HMSDA8MTL9 139 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 NUDT3O95989 172 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 SUMO1P63165 101 aaKnown RBP10.67□□□□□ -0.7
LIMS3-201ENST00000437679 ZNF415Q09FC8 603 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 RNF212Q495C1 297 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 MUC21Q5SSG8 566 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 Q6AWC8 147 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 KCNRGQ8N5I3 272 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 NDFIP1Q9BT67 221 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 TREM1Q9NP99 234 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 TP53TG3Q9ULZ0 132 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 KLF12Q9Y4X4 402 aa10.67□□□□□ -0.7
LIMS3-201ENST00000437679 TRAV8-1A0A0A6YYK1 113 aa10.66□□□□□ -0.7
LIMS3-201ENST00000437679 A0A1W2PRE2 83 aa10.66□□□□□ -0.7
LIMS3-201ENST00000437679 TCRAP04437 139 aa10.66□□□□□ -0.7
LIMS3-201ENST00000437679 ZNF726P1Q15940 193 aa10.66□□□□□ -0.7
LIMS3-201ENST00000437679 FAM159AQ6UWV7 190 aa10.66□□□□□ -0.7
LIMS3-201ENST00000437679 ATG101Q9BSB4 218 aa10.66□□□□□ -0.7
LIMS3-201ENST00000437679 EPDR1Q9UM22 224 aa10.66□□□□□ -0.7
LIMS3-201ENST00000437679 A0A0D9SG52 128 aa10.65□□□□□ -0.7
LIMS3-201ENST00000437679 GGTLC3B5MD39 225 aa10.65□□□□□ -0.7
LIMS3-201ENST00000437679 SPINK4O60575 86 aa10.65□□□□□ -0.7
LIMS3-201ENST00000437679 OR11H4Q8NGC9 324 aa10.65□□□□□ -0.7
LIMS3-201ENST00000437679 SGK494Q96LW2 274 aa10.65□□□□□ -0.7
LIMS3-201ENST00000437679 TMPRSS5Q9H3S3 457 aa10.65□□□□□ -0.7
LIMS3-201ENST00000437679 NAGKQ9UJ70 344 aa10.65□□□□□ -0.7
LIMS3-201ENST00000437679 DNAH10Q8IVF4 4471 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 TRGV11A0A075B6L2 103 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 TRAV26-1A0A087WT03 109 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 TRAV21A0A0B4J279 112 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 KANTRA0A1W2PQU2 76 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 F6UZH7 168 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 HOXA5P20719 270 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 FGF8P55075 233 aaPredicted RBP10.64□□□□□ -0.71
LIMS3-201ENST00000437679 TMEM183BQ1AE95 376 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 LGALS9BQ3B8N2 356 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 TMEM183AQ8IXX5 376 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 CYB561D1Q8N8Q1 229 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 TVP23CQ96ET8 276 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 C18orf15Q96N68 181 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 PSG8Q9UQ74 426 aa10.64□□□□□ -0.71
LIMS3-201ENST00000437679 EPPK1P58107 5090 aaKnown RBP10.64□□□□□ -0.71
LIMS3-201ENST00000437679 MUC4Q99102 2169 aa10.63□□□□□ -0.71
LIMS3-201ENST00000437679 A0A0J9YY99 117 aa10.63□□□□□ -0.71
LIMS3-201ENST00000437679 MAP1LC3B2A6NCE7 125 aa10.63□□□□□ -0.71
LIMS3-201ENST00000437679 FBLL1A6NHQ2 334 aaKnown RBP10.63□□□□□ -0.71
LIMS3-201ENST00000437679 IFNA7P01567 189 aa10.63□□□□□ -0.71
LIMS3-201ENST00000437679 FAM3BP58499 235 aaPredicted RBP10.63□□□□□ -0.71
LIMS3-201ENST00000437679 UBE2G2P60604 165 aa10.63□□□□□ -0.71
LIMS3-201ENST00000437679 STOML3Q8TAV4 291 aa10.63□□□□□ -0.71
LIMS3-201ENST00000437679 ZNF471Q9BX82 626 aaPredicted RBP10.63□□□□□ -0.71
LIMS3-201ENST00000437679 MAP1LC3BQ9GZQ8 125 aa10.63□□□□□ -0.71
LIMS3-201ENST00000437679 MRPL16Q9NX20 251 aaKnown RBP10.63□□□□□ -0.71
LIMS3-201ENST00000437679 NACAE9PAV3 2078 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 M0R2N4 97 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 BCL2L11O43521 198 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 SEC11BP0C7V7 166 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 CCL18P55774 89 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 EIF5AP63241 154 aaKnown RBP10.62□□□□□ -0.71
LIMS3-201ENST00000437679 FLI1Q01543 452 aaPredicted RBP10.62□□□□□ -0.71
LIMS3-201ENST00000437679 TDRG1Q3Y452 100 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 ZFP69Q49AA0 526 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 PRNTQ86SH4 94 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 TMEM75Q8N9X5 138 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 SPXQ9BT56 116 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 NKX6-2Q9C056 277 aaPredicted RBP10.62□□□□□ -0.71
LIMS3-201ENST00000437679 MDFICQ9P1T7 246 aa10.62□□□□□ -0.71
LIMS3-201ENST00000437679 IGLV2-18A0A075B6J9 118 aa10.61□□□□□ -0.71
LIMS3-201ENST00000437679 UMAD1C9J7I0 102 aa10.61□□□□□ -0.71
LIMS3-201ENST00000437679 H3BNG1 76 aa10.61□□□□□ -0.71
LIMS3-201ENST00000437679 PFDN1O60925 122 aa10.61□□□□□ -0.71
LIMS3-201ENST00000437679 PPT1P50897 306 aa10.61□□□□□ -0.71
LIMS3-201ENST00000437679 KCNS1Q96KK3 526 aa10.61□□□□□ -0.71
LIMS3-201ENST00000437679 SDF2L1Q9HCN8 221 aa10.61□□□□□ -0.71
LIMS3-201ENST00000437679 FAM74A7A6NL05 159 aa10.6□□□□□ -0.71
LIMS3-201ENST00000437679 IGLV2-11P01706 119 aa10.6□□□□□ -0.71
LIMS3-201ENST00000437679 IGHV3-53P01767 116 aa10.6□□□□□ -0.71
LIMS3-201ENST00000437679 SMUG1Q53HV7 270 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms