RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PCP4P48539 62 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 ZNF362Q5T0B9 420 aaPredicted RBP9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 DNAJC30Q96LL9 226 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 TMEM243Q9BU79 118 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 ZNF134P52741 427 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 RPP25LQ8N5L8 163 aaKnown RBP9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 GAGE6Q13070 117 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 RBMY1FQ15415 496 aaKnown RBP9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 HS3ST6Q96QI5 342 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 PFN2P35080 140 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 BCL6BQ8N143 479 aaPredicted RBP9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 CHAC1Q9BUX1 264 aa9.68□□□□□ -0.86
CCDC88A-207ENST00000436346 RHODO00212 210 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 TEX36Q5VZQ5 186 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 GFRA4Q9GZZ7 299 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 DEFB136Q30KP8 78 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 TRAV26-2A0A0B4J265 109 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 NAA38Q9BRA0 125 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 VPREB3Q9UKI3 123 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 AMBPP02760 352 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 CXCL1P09341 107 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 ANGP03950 147 aaKnown RBP9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 PRB1P04280 392 aa9.67□□□□□ -0.86
CCDC88A-207ENST00000436346 LHFPL1Q86WI0 220 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 PRSS29PA6NIE9 313 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 LINC00479Q96M42 142 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 F8P00451 2351 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 COL27A1Q8IZC6 1860 aaPredicted RBP9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 CENPFP49454 3210 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 hADV29S1A0JD25 119 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 SYS1-DBNDD2H3BUS1 97 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 NDUFA4L2Q9NRX3 87 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 IGHV3-38A0A0C4DH36 116 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 FNDC10F2Z333 226 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 QRFPP83859 136 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 MTORP42345 2549 aa9.66□□□□□ -0.86
CCDC88A-207ENST00000436346 RNF144BQ7Z419 303 aa9.65□□□□□ -0.86
CCDC88A-207ENST00000436346 LY6G6EA0A0G2JKS1 128 aa9.65□□□□□ -0.86
CCDC88A-207ENST00000436346 ARMS2P0C7Q2 107 aa9.65□□□□□ -0.86
CCDC88A-207ENST00000436346 U3KQA8 63 aa9.65□□□□□ -0.86
CCDC88A-207ENST00000436346 USP24Q9UPU5 2620 aa9.65□□□□□ -0.86
CCDC88A-207ENST00000436346 A0A1B0GW64 132 aa9.65□□□□□ -0.86
CCDC88A-207ENST00000436346 NOP10Q9NPE3 64 aaKnown RBP9.65□□□□□ -0.86
CCDC88A-207ENST00000436346 TRAV25A0A0B4J276 109 aa9.65□□□□□ -0.86
CCDC88A-207ENST00000436346 SIGMAR1Q99720 223 aa9.65□□□□□ -0.87
CCDC88A-207ENST00000436346 UBE2CO00762 179 aa9.65□□□□□ -0.87
CCDC88A-207ENST00000436346 NDUFA4O00483 81 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 IGKV1-39P01597 117 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 IGKV1D-39P04432 117 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 CCL24O00175 119 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 IGHV1OR15-1A0A075B7D0 117 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 KIR3DS1Q14943 382 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 C1orf194Q5T5A4 169 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 CD5LO43866 347 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 TMEM141Q96I45 108 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 RPL18AQ02543 176 aaKnown RBP9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 PCSK5Q92824 1860 aa9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 FASNP49327 2511 aaKnown RBP9.64□□□□□ -0.87
CCDC88A-207ENST00000436346 OCIAD2Q56VL3 154 aa9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 H3BMM0 161 aa9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 DUX4L9Q6RFH8 374 aaPredicted RBP9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 Q6ZS49 121 aa9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 UBE2BP63146 152 aa9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 DSCR8Q96T75 97 aa9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 IGKV2D-24A0A075B6R9 120 aa9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 HIST3H2BBQ8N257 126 aa9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 Q9HAA7 133 aa9.63□□□□□ -0.87
CCDC88A-207ENST00000436346 IGHV7-4-1A0A0J9YVY3 117 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 NDUFS5O43920 106 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 FAM120AOSQ5T036 256 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 TMEM213A2RRL7 107 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 XCL1P47992 114 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 YPEL3P61236 119 aaPredicted RBP9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 MLANAQ16655 118 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 SPINK8P0C7L1 97 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 RNASE13Q5GAN3 156 aaKnown RBP9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 PLA2G2CQ5R387 149 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 IGHV2-5P01817 119 aa9.62□□□□□ -0.87
CCDC88A-207ENST00000436346 C17orf58Q2M2W7 97 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 NDUFAF3Q9BU61 184 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 LY96Q9Y6Y9 160 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 KLF5Q13887 457 aaPredicted RBP9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 ZNRF2Q8NHG8 242 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 TPSG1Q9NRR2 321 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 GAGE2BQ13066 116 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 ATP6V0BQ99437 205 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 A0A0J9YY99 117 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 PRSS46E5RG02 174 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 FGF16O43320 207 aa9.61□□□□□ -0.87
CCDC88A-207ENST00000436346 NEGR1Q7Z3B1 354 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 NBL1P41271 181 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 Q6ZQT7 251 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 SDHAF1A6NFY7 115 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 CRLF1O75462 422 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 NXPH4O95158 308 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 HLA-DRB4P13762 266 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 ZC2HC1BQ5TFG8 222 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 TMEM256Q8N2U0 113 aa9.6□□□□□ -0.87
CCDC88A-207ENST00000436346 SCRT2Q9NQ03 307 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms