RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 SEC11BP0C7V7 166 aa8.16□□□□□ -1.1
COL28A1-203ENST00000435823 TPT1P13693 172 aaKnown RBP8.16□□□□□ -1.1
COL28A1-203ENST00000435823 GNG5P63218 68 aa8.16□□□□□ -1.1
COL28A1-203ENST00000435823 ZNF726P1Q15940 193 aa8.16□□□□□ -1.1
COL28A1-203ENST00000435823 TMUB2Q71RG4 321 aa8.16□□□□□ -1.1
COL28A1-203ENST00000435823 ZFAND2AQ8N6M9 145 aa8.16□□□□□ -1.1
COL28A1-203ENST00000435823 STOML3Q8TAV4 291 aa8.16□□□□□ -1.1
COL28A1-203ENST00000435823 RNASE8Q8TDE3 154 aaKnown RBP8.16□□□□□ -1.1
COL28A1-203ENST00000435823 TMED6Q8WW62 240 aa8.16□□□□□ -1.1
COL28A1-203ENST00000435823 hCG_2014768A0A024R1R8 64 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 IGHV4-4A0A075B6R2 117 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 A0A1W2PRE2 83 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 PLAC8L1A1L4L8 177 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 MAP1LC3B2A6NCE7 125 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 CBY3A6NI87 242 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 UMAD1C9J7I0 102 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 RGS13O14921 159 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 ZNF324O75467 553 aaPredicted RBP8.15□□□□□ -1.1
COL28A1-203ENST00000435823 DEFB130BP0DP73 79 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 DEFB130AP0DP74 79 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 HTN3P15516 51 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 SUMO1P63165 101 aaKnown RBP8.15□□□□□ -1.1
COL28A1-203ENST00000435823 AKAP14Q86UN6 197 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 EIF4E3Q8N5X7 224 aaKnown RBP8.15□□□□□ -1.1
COL28A1-203ENST00000435823 ZNF680Q8NEM1 530 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 LINC00467Q9BRT7 94 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 NDFIP1Q9BT67 221 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 MAP1LC3BQ9GZQ8 125 aa8.15□□□□□ -1.1
COL28A1-203ENST00000435823 NOP10Q9NPE3 64 aaKnown RBP8.15□□□□□ -1.1
COL28A1-203ENST00000435823 SCO2A0A1W2PP80 73 aa8.14□□□□□ -1.11
COL28A1-203ENST00000435823 C1QBP02746 253 aa8.14□□□□□ -1.11
COL28A1-203ENST00000435823 TCRAP04437 139 aa8.14□□□□□ -1.11
COL28A1-203ENST00000435823 FGF8P55075 233 aaPredicted RBP8.14□□□□□ -1.11
COL28A1-203ENST00000435823 PRR9Q5T870 116 aa8.14□□□□□ -1.11
COL28A1-203ENST00000435823 KRTAP19-1Q8IUB9 90 aa8.14□□□□□ -1.11
COL28A1-203ENST00000435823 NDUFAF3Q9BU61 184 aa8.14□□□□□ -1.11
COL28A1-203ENST00000435823 APLNQ9ULZ1 77 aa8.14□□□□□ -1.11
COL28A1-203ENST00000435823 IGHV1OR15-1A0A075B7D0 117 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 GGTLC3B5MD39 225 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 IFNA7P01567 189 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 UBE2G2P60604 165 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 ANXA2RQ3ZCQ2 193 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 LGALS9CQ6DKI2 356 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 EIF5AL1Q6IS14 154 aaKnown RBP8.13□□□□□ -1.11
COL28A1-203ENST00000435823 DPPA3Q6W0C5 159 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 CYB561D1Q8N8Q1 229 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 FAM213BQ8TBF2 198 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 FAM210BQ96KR6 192 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 NKX6-2Q9C056 277 aaPredicted RBP8.13□□□□□ -1.11
COL28A1-203ENST00000435823 TMPRSS5Q9H3S3 457 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 EPDR1Q9UM22 224 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 ALMS1Q8TCU4 4167 aa8.13□□□□□ -1.11
COL28A1-203ENST00000435823 TRAV8-1A0A0A6YYK1 113 aa8.12□□□□□ -1.11
COL28A1-203ENST00000435823 FBLL1A6NHQ2 334 aaKnown RBP8.12□□□□□ -1.11
COL28A1-203ENST00000435823 ATP5G1P05496 136 aa8.12□□□□□ -1.11
COL28A1-203ENST00000435823 ATP5G3P48201 142 aa8.12□□□□□ -1.11
COL28A1-203ENST00000435823 FHITP49789 147 aa8.12□□□□□ -1.11
COL28A1-203ENST00000435823 LGALSLQ3ZCW2 172 aaPredicted RBP8.12□□□□□ -1.11
COL28A1-203ENST00000435823 Q6AWC8 147 aa8.12□□□□□ -1.11
COL28A1-203ENST00000435823 ATG101Q9BSB4 218 aa8.12□□□□□ -1.11
COL28A1-203ENST00000435823 KRTAP4-7Q9BYR0 210 aa8.12□□□□□ -1.11
COL28A1-203ENST00000435823 TREM1Q9NP99 234 aa8.12□□□□□ -1.11
COL28A1-203ENST00000435823 RYR2Q92736 4967 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 PLECQ15149 4684 aaKnown RBP8.11□□□□□ -1.11
COL28A1-203ENST00000435823 TRAV21A0A0B4J279 112 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 FAM74A7A6NL05 159 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 F6UZH7 168 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 PPT1P50897 306 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 FLI1Q01543 452 aaPredicted RBP8.11□□□□□ -1.11
COL28A1-203ENST00000435823 DAZ2Q13117 558 aaKnown RBP8.11□□□□□ -1.11
COL28A1-203ENST00000435823 ZFP69Q49AA0 526 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 MUC21Q5SSG8 566 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 IBA57Q5T440 356 aaKnown RBP8.11□□□□□ -1.11
COL28A1-203ENST00000435823 FAM159AQ6UWV7 190 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 TMEM75Q8N9X5 138 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 C11orf72Q8NBR9 251 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 SFT2D1Q8WV19 159 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 SGK494Q96LW2 274 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 LYSTQ99698 3801 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 GSN-AS1Q9NRJ2 163 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 PSG8Q9UQ74 426 aa8.11□□□□□ -1.11
COL28A1-203ENST00000435823 RYR3Q15413 4870 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 TRGV11A0A075B6L2 103 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 GAGE12BA1L429 117 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 F5H768 121 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 PEX7O00628 323 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 GAGE7O76087 117 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 H2AFB1P0C5Y9 115 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 GAGE12FP0CL80 117 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 GAGE12GP0CL81 117 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 GAGE12IP0CL82 117 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 TCL1AP56279 114 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 ZNF415Q09FC8 603 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 Q6ZQT7 251 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 PRNTQ86SH4 94 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 LINC00612Q8N6U2 182 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 MBD3L1Q8WWY6 194 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 HIST1H2BAQ96A08 127 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 TCEAL7Q9BRU2 100 aa8.1□□□□□ -1.11
COL28A1-203ENST00000435823 NAGKQ9UJ70 344 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms