RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 PRAC2D3DTV9 90 aa8.71□□□□□ -1.01
USP4-205ENST00000431357 SNAI2O43623 268 aa8.71□□□□□ -1.01
USP4-205ENST00000431357 ZNF207O43670 478 aaKnown RBP8.71□□□□□ -1.01
USP4-205ENST00000431357 FOXI2Q6ZQN5 318 aa8.71□□□□□ -1.01
USP4-205ENST00000431357 METTL26Q96S19 204 aa8.71□□□□□ -1.01
USP4-205ENST00000431357 MRPL16Q9NX20 251 aaKnown RBP8.71□□□□□ -1.01
USP4-205ENST00000431357 MSRB1Q9NZV6 116 aa8.71□□□□□ -1.01
USP4-205ENST00000431357 ANKHD1Q8IWZ3 2542 aaKnown RBP8.71□□□□□ -1.02
USP4-205ENST00000431357 IGHV3-35A0A0C4DH35 117 aa8.71□□□□□ -1.02
USP4-205ENST00000431357 CLPSL1A2RUU4 121 aa8.71□□□□□ -1.02
USP4-205ENST00000431357 LEPP41159 167 aa8.71□□□□□ -1.02
USP4-205ENST00000431357 FXYD7P58549 80 aa8.71□□□□□ -1.02
USP4-205ENST00000431357 TMEM78Q5T7P6 136 aa8.71□□□□□ -1.02
USP4-205ENST00000431357 IL17RELQ6ZVW7 336 aa8.71□□□□□ -1.02
USP4-205ENST00000431357 Q8N8P6 123 aa8.71□□□□□ -1.02
USP4-205ENST00000431357 AJUBAQ96IF1 538 aa8.71□□□□□ -1.02
USP4-205ENST00000431357 ARHGAP32A7KAX9 2087 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 ZFHX2Q9C0A1 2572 aaPredicted RBP8.7□□□□□ -1.02
USP4-205ENST00000431357 IGHV3OR16-8A0A075B7F1 116 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 ATP5LO75964 103 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 CLEC19AQ6UXS0 136 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 ERASQ7Z444 233 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 OR2K2Q8NGT1 345 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 CCDC140Q96MF4 163 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 AGPAT4-IT1Q9H0P7 198 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 ZMAT4Q9H898 229 aa8.7□□□□□ -1.02
USP4-205ENST00000431357 CENPVL3A0A0U1RRI6 287 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 EFNA4P52798 201 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 C9orf47Q6ZRZ4 202 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 RNF182Q8N6D2 247 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 U3KQE9 123 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 IGKV3D-20A0A0C4DH25 116 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 SAA4P35542 130 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 FOXE3Q13461 319 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 ADAMTSL5Q6ZMM2 481 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 SPANXA1Q9NS26 97 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 DKK2Q9UBU2 259 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 TNFRSF18Q9Y5U5 241 aa8.69□□□□□ -1.02
USP4-205ENST00000431357 TPRP12270 2363 aaKnown RBP8.69□□□□□ -1.02
USP4-205ENST00000431357 GVINP1Q7Z2Y8 2422 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 LAMA5O15230 3695 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 IGHV4-4A0A075B6R2 117 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 TRAV8-2A0A0B4J237 113 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 TRBV7-9A0A0J9YWB2 115 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 NMUP48645 174 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 ATP5G2Q06055 141 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 RAX2Q96IS3 184 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 HIGD1BQ9P298 99 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 LENEPQ9Y5L5 61 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 PIEZO2Q9H5I5 2752 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 NPFFO15130 113 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 PRSS1P07477 247 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 EVI2AP22794 236 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 C8orf86Q6ZUL3 223 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 C18orf15Q96N68 181 aa8.68□□□□□ -1.02
USP4-205ENST00000431357 IGLV2-18A0A075B6J9 118 aa8.67□□□□□ -1.02
USP4-205ENST00000431357 FAM223BA6NKX1 122 aa8.67□□□□□ -1.02
USP4-205ENST00000431357 G3V318 75 aa8.67□□□□□ -1.02
USP4-205ENST00000431357 IGKCP01834 107 aa8.67□□□□□ -1.02
USP4-205ENST00000431357 UQCRFS1P47985 274 aa8.67□□□□□ -1.02
USP4-205ENST00000431357 FAM223AQ8IWN6 122 aa8.67□□□□□ -1.02
USP4-205ENST00000431357 C5orf56Q8N8D9 126 aa8.67□□□□□ -1.02
USP4-205ENST00000431357 ZNF418Q8TF45 676 aaPredicted RBP8.67□□□□□ -1.02
USP4-205ENST00000431357 ADGRG4Q8IZF6 3080 aa8.67□□□□□ -1.02
USP4-205ENST00000431357 IGHV3-66A0A0C4DH42 116 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 IGHV7-4-1A0A0J9YVY3 117 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 HLA-DRB4P13762 266 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 PPIFP30405 207 aaKnown RBP8.66□□□□□ -1.02
USP4-205ENST00000431357 LMO4P61968 165 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 KIR3DS1Q14943 382 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 LCNL1Q6ZST4 164 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 C9orf139Q6ZV77 190 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 WFDC3Q8IUB2 231 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 TMEM158Q8WZ71 300 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 C11orf21Q9P2W6 132 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 RAXQ9Y2V3 346 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 HLA-DRB4X5D2U9 266 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 DPM2O94777 84 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 GAS8-AS1O95177 125 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 CRIP2P52943 208 aaPredicted RBP8.66□□□□□ -1.02
USP4-205ENST00000431357 LAGE3Q14657 143 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 PCP2Q8IVA1 136 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 MYOZ3Q8TDC0 251 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 UBTD1Q9HAC8 227 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 HHLA3Q9XRX5 114 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 PTPRQQ9UMZ3 2332 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 ABCA4P78363 2273 aa8.66□□□□□ -1.02
USP4-205ENST00000431357 ZZEF1O43149 2961 aa8.65□□□□□ -1.02
USP4-205ENST00000431357 A0A1W2PPR1 153 aa8.65□□□□□ -1.02
USP4-205ENST00000431357 GAGE5Q13069 117 aa8.65□□□□□ -1.02
USP4-205ENST00000431357 GAGE6Q13070 117 aa8.65□□□□□ -1.02
USP4-205ENST00000431357 C16orf92Q96LL3 132 aa8.65□□□□□ -1.02
USP4-205ENST00000431357 MOB4Q9Y3A3 225 aa8.65□□□□□ -1.02
USP4-205ENST00000431357 TRAV41A0A0B4J266 112 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 A0A0G2JLM5 398 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 LINC01548A6NM66 108 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 GATA1P15976 413 aaPredicted RBP8.65□□□□□ -1.03
USP4-205ENST00000431357 ARL3P36405 182 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 HERV-K104P63124 156 aa8.65□□□□□ -1.03
USP4-205ENST00000431357 SRSF1Q07955 248 aaKnown RBP eCLIP8.65□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms