RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 C9orf66Q5T8R8 295 aa11.77□□□□□ -0.52
SHOX2-202ENST00000425436 Q6AWC8 147 aa11.77□□□□□ -0.52
SHOX2-202ENST00000425436 REC114Q7Z4M0 266 aa11.77□□□□□ -0.52
SHOX2-202ENST00000425436 PEMTQ9UBM1 199 aa11.77□□□□□ -0.52
SHOX2-202ENST00000425436 NOTCH1P46531 2555 aa11.77□□□□□ -0.53
SHOX2-202ENST00000425436 C2orf70A6NJV1 201 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 CA1P00915 261 aaPredicted RBP11.76□□□□□ -0.53
SHOX2-202ENST00000425436 SMIM6P0DI80 62 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 CBLN1P23435 193 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 SAMD5Q5TGI4 173 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 ADAMTSL5Q6ZMM2 481 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 LINC00322Q6ZN03 302 aaPredicted RBP11.76□□□□□ -0.53
SHOX2-202ENST00000425436 TMEM136Q6ZRR5 245 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 RBPMS2Q6ZRY4 209 aaKnown RBP11.76□□□□□ -0.53
SHOX2-202ENST00000425436 HIST3H2BBQ8N257 126 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 OR2D3Q8NGH3 330 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 ZC2HC1AQ96GY0 325 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 PRR25Q96S07 402 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 IGHV3-66A0A0C4DH42 116 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 IGHV7-4-1A0A0J9YVY3 117 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 TMEM213A2RRL7 107 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 RPS20P60866 119 aaKnown RBP11.76□□□□□ -0.53
SHOX2-202ENST00000425436 FAM162BQ5T6X4 162 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 C16orf92Q96LL3 132 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 PPP1R14DQ9NXH3 145 aa11.76□□□□□ -0.53
SHOX2-202ENST00000425436 IGHV3-49A0A0A0MS15 119 aa11.75□□□□□ -0.53
SHOX2-202ENST00000425436 A0A1B0GW15 77 aa11.75□□□□□ -0.53
SHOX2-202ENST00000425436 RAB4BP61018 213 aa11.75□□□□□ -0.53
SHOX2-202ENST00000425436 MRPL54Q6P161 138 aaKnown RBP11.75□□□□□ -0.53
SHOX2-202ENST00000425436 IGKV2-40A0A087WW87 121 aaPredicted RBP11.74□□□□□ -0.53
SHOX2-202ENST00000425436 A8MWP6 167 aa11.74□□□□□ -0.53
SHOX2-202ENST00000425436 IGKV2D-40P01614 121 aaPredicted RBP11.74□□□□□ -0.53
SHOX2-202ENST00000425436 APCSP02743 223 aa11.74□□□□□ -0.53
SHOX2-202ENST00000425436 CRISP2P16562 243 aa11.74□□□□□ -0.53
SHOX2-202ENST00000425436 SMPXQ9UHP9 88 aa11.74□□□□□ -0.53
SHOX2-202ENST00000425436 IGHV3OR16-13A0A075B7E8 117 aa11.73□□□□□ -0.53
SHOX2-202ENST00000425436 IGHV3-74A0A0B4J1X5 117 aa11.73□□□□□ -0.53
SHOX2-202ENST00000425436 SPINK4O60575 86 aa11.73□□□□□ -0.53
SHOX2-202ENST00000425436 KRTAP10-11P60412 298 aa11.73□□□□□ -0.53
SHOX2-202ENST00000425436 HBBP68871 147 aa11.73□□□□□ -0.53
SHOX2-202ENST00000425436 Q0VG73 95 aa11.73□□□□□ -0.53
SHOX2-202ENST00000425436 RHPN1-AS1Q9BWJ2 59 aa11.73□□□□□ -0.53
SHOX2-202ENST00000425436 LENEPQ9Y5L5 61 aa11.73□□□□□ -0.53
SHOX2-202ENST00000425436 TRAV8-2A0A0B4J237 113 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 A0A1B0GXF2 115 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 INSL3P51460 131 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 BEAN1Q3B7T3 259 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 TMEM78Q5T7P6 136 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 C9orf47Q6ZRZ4 202 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 BORCS7Q96B45 105 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 ASCL2Q99929 193 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 VGLL1Q99990 258 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 GPR61Q9BZJ8 451 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 NRN1Q9NPD7 142 aa11.72□□□□□ -0.53
SHOX2-202ENST00000425436 TMEM189A5PLL7 270 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 FABP5P3A8MUU1 101 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 ZNF705FA8MVS1 300 aaPredicted RBP11.71□□□□□ -0.53
SHOX2-202ENST00000425436 IGLV1-51P01701 117 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 PRB2P02812 416 aaPredicted RBP11.71□□□□□ -0.53
SHOX2-202ENST00000425436 CRIP1P50238 77 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 RIGQ13278 110 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 OR10J3Q5JRS4 329 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 TCF24Q7RTU0 167 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 DYNLRB2Q8TF09 96 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 GTSF1Q8WW33 167 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 TMEM18Q96B42 140 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 LINC00477Q96M19 166 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 C12orf57Q99622 126 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 SIGLEC8Q9NYZ4 499 aa11.71□□□□□ -0.53
SHOX2-202ENST00000425436 WIPF1O43516 503 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 HLA-DMBP28068 263 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 ID1P41134 155 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 ZNF138P52744 262 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 DEFB114Q30KQ6 69 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 IGFL4Q6B9Z1 124 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 PGLYRP4Q96LB8 373 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 C8orf49Q96NF6 230 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 IFITM10A6NMD0 228 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 SH2D1AO60880 128 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 CD300EQ496F6 205 aaPredicted RBP11.7□□□□□ -0.54
SHOX2-202ENST00000425436 GFI1BQ5VTD9 330 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 RNF182Q8N6D2 247 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 HIST1H2BLQ99880 126 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 DNAH3Q8TD57 4116 aa11.7□□□□□ -0.54
SHOX2-202ENST00000425436 SORL1Q92673 2214 aa11.69□□□□□ -0.54
SHOX2-202ENST00000425436 A0A1B0GUT8 65 aa11.69□□□□□ -0.54
SHOX2-202ENST00000425436 SOCS3O14543 225 aa11.69□□□□□ -0.54
SHOX2-202ENST00000425436 ESDP10768 282 aa11.69□□□□□ -0.54
SHOX2-202ENST00000425436 FABP4P15090 132 aa11.69□□□□□ -0.54
SHOX2-202ENST00000425436 RPL11P62913 178 aaKnown RBP11.69□□□□□ -0.54
SHOX2-202ENST00000425436 HIST1H1AQ02539 215 aaPredicted RBP11.69□□□□□ -0.54
SHOX2-202ENST00000425436 EGFEM1PQ0D2K5 195 aa11.69□□□□□ -0.54
SHOX2-202ENST00000425436 OR10J6PQ8NGY7 276 aa11.69□□□□□ -0.54
SHOX2-202ENST00000425436 AGPAT4-IT1Q9H0P7 198 aa11.69□□□□□ -0.54
SHOX2-202ENST00000425436 TRBV7-9A0A0J9YWB2 115 aa11.68□□□□□ -0.54
SHOX2-202ENST00000425436 PRAC2D3DTV9 90 aa11.68□□□□□ -0.54
SHOX2-202ENST00000425436 FRMD6-AS1P0C7T7 363 aa11.68□□□□□ -0.54
SHOX2-202ENST00000425436 PAFAH1B2P68402 229 aa11.68□□□□□ -0.54
SHOX2-202ENST00000425436 DNLZQ5SXM8 178 aa11.68□□□□□ -0.54
SHOX2-202ENST00000425436 KPRPQ5T749 579 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms