RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 HIST1H2BKO60814 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BJP06899 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BOP23527 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BBP33778 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BDP58876 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BCP62807 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST2H2BEQ16778 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 DEFB113Q30KQ7 82 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-204ENST00000423058 ZC2HC1BQ5TFG8 222 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 Q8N8P6 123 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BHQ93079 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BNQ99877 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BMQ99879 126 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 A0A0A6YYD4 124 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 NXPH4O95158 308 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 IGKV1-39P01597 117 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 IGKV1D-39P04432 117 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 SPINK8P0C7L1 97 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 CLPSL2Q6UWE3 100 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 TMEM14EPQ6UXP3 125 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 Q8TCH9 128 aa5.51□□□□□ -1.53
SCN1A-204ENST00000423058 IGHV7-4-1A0A0J9YVY3 117 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 XCL1P47992 114 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 TCF15Q12870 199 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 DAZ2Q13117 558 aaKnown RBP5.5□□□□□ -1.53
SCN1A-204ENST00000423058 Q5BKY6 102 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 DAZ4Q86SG3 579 aaKnown RBP5.5□□□□□ -1.53
SCN1A-204ENST00000423058 DAZ3Q9NR90 486 aaKnown RBP5.5□□□□□ -1.53
SCN1A-204ENST00000423058 PCDH15Q96QU1 1955 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 KNCNA6PVL3 124 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 CSRP3P50461 194 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 A0A087X0K7 114 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 MP68P56378 58 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 ORMDL1Q9P0S3 153 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 A0A1W2PPI3 338 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 RNF222A6NCQ9 220 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 SDHAF1A6NFY7 115 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 SHISA9B4DS77 424 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 SMKR1H3BMG3 65 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 LY6HO94772 140 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 Q6ZS49 121 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 ZNF833PQ6ZTB9 187 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 NTF4P34130 210 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 HGFACQ04756 655 aa5.5□□□□□ -1.53
SCN1A-204ENST00000423058 TRAV3A0A0B4J244 114 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 KIR2DL5BQ8NHK3 375 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 TIMM17AQ99595 171 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 ZNF492Q9P255 531 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 NOTCH4Q99466 2003 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 PRRC2AP48634 2157 aaKnown RBP5.49□□□□□ -1.53
SCN1A-204ENST00000423058 SLC25A29Q8N8R3 303 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 hDV102S1A0JD36 115 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 GP9P14770 177 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 ARHGAP32A7KAX9 2087 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 TRAV12-2A0A075B6T6 113 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 TRAV12-1A0A0B4J245 112 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 C2orf66Q6UXQ4 117 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 A0A096LPF7 62 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 F8W735 103 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-204ENST00000423058 TBX6O95947 436 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-204ENST00000423058 FOXE3Q13461 319 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 C9orf47Q6ZRZ4 202 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 CAMK2N2Q96S95 79 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 NDUFA12Q9UI09 145 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 VWCEQ96DN2 955 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 WISP1O95388 367 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 FLVCR1-AS1Q8TAF5 88 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 FANCD2OSQ96PS1 177 aa5.49□□□□□ -1.53
SCN1A-204ENST00000423058 IGKV1-16P04430 117 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 FGF6P10767 208 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 MST1P26927 711 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 IGFL4Q6B9Z1 124 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 HIST1H2BLQ99880 126 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 TMEM14CQ9P0S9 112 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 LINC00473A8K010 186 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 C8orf31Q8N9H6 132 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 C8orf49Q96NF6 230 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 C20orf78Q9BR46 151 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 COX7A2LO14548 114 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 CRYGCP07315 174 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 NDUFA4L2Q9NRX3 87 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 IGLL5B9A064 214 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 IFITM1P13164 125 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 COL4A5P29400 1685 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 C15orf62A8K5M9 175 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 HLA-DMBP28068 263 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 PRO1854Q9UHT4 67 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 IGKV1-27A0A075B6S5 117 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 IGHV3-38A0A0C4DH36 116 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 Q8NFD4 153 aa5.48□□□□□ -1.53
SCN1A-204ENST00000423058 A0A0J9YY99 117 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 IGHG2P01859 326 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 ADAMTSL5Q6ZMM2 481 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 C5orf24Q7Z6I8 188 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 PIFOQ8TCI5 191 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 IGKV1-12A0A0C4DH73 117 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 F8W1H4 67 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 IGKV1D-12P01611 117 aa5.47□□□□□ -1.53
SCN1A-204ENST00000423058 IL15RAQ13261 267 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms