RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 A0A1B0GXF2 115 aa8.52□□□□□ -1.04
TCOF1-203ENST00000394269 RPLP1P05386 114 aaKnown RBP8.52□□□□□ -1.04
TCOF1-203ENST00000394269 IGHV4-31P0DP07 118 aa8.52□□□□□ -1.04
TCOF1-203ENST00000394269 CT83Q5H943 113 aa8.52□□□□□ -1.04
TCOF1-203ENST00000394269 ATP5L2Q7Z4Y8 100 aa8.52□□□□□ -1.04
TCOF1-203ENST00000394269 MSRB1Q9NZV6 116 aa8.52□□□□□ -1.04
TCOF1-203ENST00000394269 A0A0G2JLM5 398 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 FXYD7P58549 80 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 WFDC11Q8NEX6 87 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 MCRIP2Q9BUT9 160 aaKnown RBP8.52□□□□□ -1.05
TCOF1-203ENST00000394269 TRAV8-2A0A0B4J237 113 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 NPIPB6E9PJ23 425 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 IGKV3-20P01619 116 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 AMN1Q8IY45 258 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 C11orf44Q8N8P7 122 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 WIPF2Q8TF74 440 aaPredicted RBP8.52□□□□□ -1.05
TCOF1-203ENST00000394269 USMG5Q96IX5 58 aa8.52□□□□□ -1.05
TCOF1-203ENST00000394269 FABP5P3A8MUU1 101 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 SMKR1H3BMG3 65 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 BMI1P35226 326 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 HIST1H1AQ02539 215 aaPredicted RBP8.51□□□□□ -1.05
TCOF1-203ENST00000394269 RASL11AQ6T310 242 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 SLC50A1Q9BRV3 221 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 GFRA4Q9GZZ7 299 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 OTOGQ6ZRI0 2925 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 FAM181BA6NEQ2 426 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 LOC102724200A0A096LPH7 203 aaPredicted RBP8.51□□□□□ -1.05
TCOF1-203ENST00000394269 FOXE3Q13461 319 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 DNLZQ5SXM8 178 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 FER1L6-AS1Q8NA97 138 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 C20orf173Q96LM9 149 aa8.51□□□□□ -1.05
TCOF1-203ENST00000394269 PEF1Q9UBV8 284 aaKnown RBP8.51□□□□□ -1.05
TCOF1-203ENST00000394269 NCR2O95944 276 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 PRSS3P2Q8NHM4 247 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 NDUFA4O00483 81 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 DEFB136Q30KP8 78 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 FAM106AQ4KMX7 169 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 C19orf54Q5BKX5 351 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 C1orf194Q5T5A4 169 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 ZNF705AQ6ZN79 300 aaPredicted RBP8.5□□□□□ -1.05
TCOF1-203ENST00000394269 DUX3Q96PT4 197 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 A0A096LNT2 108 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 HAX1O00165 279 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 C3orf79P0CE67 100 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 SYNJ2BPP57105 145 aa8.5□□□□□ -1.05
TCOF1-203ENST00000394269 D6R8Y8 96 aa8.49□□□□□ -1.05
TCOF1-203ENST00000394269 LOXL1Q08397 574 aaPredicted RBP8.49□□□□□ -1.05
TCOF1-203ENST00000394269 KIR3DS1Q14943 382 aa8.49□□□□□ -1.05
TCOF1-203ENST00000394269 VAMP8Q9BV40 100 aa8.49□□□□□ -1.05
TCOF1-203ENST00000394269 SNHG12Q9BXW3 62 aa8.49□□□□□ -1.05
TCOF1-203ENST00000394269 FAM231BA6NCW3 169 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 LINC00173Q6ZV60 143 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 PMCHL2Q9BQD1 86 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 DAZ1Q9NQZ3 744 aaKnown RBP8.48□□□□□ -1.05
TCOF1-203ENST00000394269 VPREB3Q9UKI3 123 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 UFC1Q9Y3C8 167 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 LINC00614P0C842 121 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 OR10J6PQ8NGY7 276 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 TRBV6-1A0A0K0K1D8 114 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 IGLV1-40P01703 118 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 CKS2P33552 79 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 RNASE4P34096 147 aaKnown RBP8.48□□□□□ -1.05
TCOF1-203ENST00000394269 NDUFAF3Q9BU61 184 aa8.48□□□□□ -1.05
TCOF1-203ENST00000394269 C2orf88Q9BSF0 95 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 C11orf21Q9P2W6 132 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 J3QLI3 93 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 ZNF688P0C7X2 276 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 BATFQ16520 125 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 TMEM190Q8WZ59 177 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 A0A087X0K7 114 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 IGHV7-4-1A0A0J9YVY3 117 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 ESDP10768 282 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 EVI2AP22794 236 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 S100A4P26447 101 aaKnown RBP8.47□□□□□ -1.05
TCOF1-203ENST00000394269 EBLN2Q6P2I7 272 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 C18orf65Q6ZTR6 163 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 FA2HQ7L5A8 372 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 URB1-AS1Q96HZ7 61 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 U3KQE9 123 aa8.47□□□□□ -1.05
TCOF1-203ENST00000394269 IGKV3D-20A0A0C4DH25 116 aa8.46□□□□□ -1.05
TCOF1-203ENST00000394269 BTF3P20290 206 aaKnown RBP8.46□□□□□ -1.05
TCOF1-203ENST00000394269 IFI27P40305 119 aaPredicted RBP8.46□□□□□ -1.05
TCOF1-203ENST00000394269 CRIP2P52943 208 aaPredicted RBP8.46□□□□□ -1.05
TCOF1-203ENST00000394269 PPP1R14DQ9NXH3 145 aa8.46□□□□□ -1.05
TCOF1-203ENST00000394269 LEPROTL1O95214 131 aa8.46□□□□□ -1.06
TCOF1-203ENST00000394269 PSMB8P28062 276 aa8.46□□□□□ -1.06
TCOF1-203ENST00000394269 TCTAP57738 103 aa8.46□□□□□ -1.06
TCOF1-203ENST00000394269 SPANXN1Q5VSR9 72 aa8.46□□□□□ -1.06
TCOF1-203ENST00000394269 GPHB5Q86YW7 130 aa8.46□□□□□ -1.06
TCOF1-203ENST00000394269 PRELID3AQ96N28 172 aa8.46□□□□□ -1.06
TCOF1-203ENST00000394269 H3BVH4 76 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 M0R381 172 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 ZNF124Q15973 351 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 PRR9Q5T870 116 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 PRSS57Q6UWY2 283 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 Q6YL49 198 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 C9orf139Q6ZV77 190 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 OR10AG1Q8NH19 301 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 AGRNO00468 2067 aa8.45□□□□□ -1.06
TCOF1-203ENST00000394269 GAS8-AS1O95177 125 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms