RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 TMEM213A2RRL7 107 aa11.34□□□□□ -0.59
TCOF1-202ENST00000377797 OR11H12B2RN74 326 aa11.34□□□□□ -0.59
TCOF1-202ENST00000377797 ZNF843Q8N446 348 aa11.34□□□□□ -0.59
TCOF1-202ENST00000377797 C14orf178Q8N769 122 aaPredicted RBP11.34□□□□□ -0.59
TCOF1-202ENST00000377797 PYY3Q5JQD4 70 aa11.33□□□□□ -0.6
TCOF1-202ENST00000377797 CFHR4Q92496 578 aa11.33□□□□□ -0.6
TCOF1-202ENST00000377797 SRSF1Q07955 248 aaKnown RBP eCLIP11.33□□□□□ -0.6
TCOF1-202ENST00000377797 MIEN1Q9BRT3 115 aa11.33□□□□□ -0.6
TCOF1-202ENST00000377797 SMKR1H3BMG3 65 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 TANC2Q9HCD6 1990 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 TRAV8-6A0A0B4J262 113 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 TMEM170BQ5T4T1 132 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 SORL1Q92673 2214 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 H7C2G1 150 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 SPINK13Q1W4C9 94 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 SMPXQ9UHP9 88 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 TNRC6BQ9UPQ9 1833 aaKnown RBP11.32□□□□□ -0.6
TCOF1-202ENST00000377797 OR11H2Q8NH07 326 aa11.32□□□□□ -0.6
TCOF1-202ENST00000377797 SNAI2O43623 268 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 CMC4P56277 68 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-202ENST00000377797 BCL6BQ8N143 479 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-202ENST00000377797 IGKV1D-37A0A075B6S9 117 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 SMIM27A0A1W2PRY6 76 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 LTAP01374 205 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 IFI27L1Q96BM0 104 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 UBE2E2Q96LR5 201 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 DPH3P1Q9H4G8 78 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 POLQO75417 2590 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 A8MWP6 167 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 ERASQ7Z444 233 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 GTSCR1Q86UQ5 136 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 GEMIN7Q9H840 131 aaKnown RBP11.31□□□□□ -0.6
TCOF1-202ENST00000377797 IGKV3OR2-268A0A0C4DH90 116 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 PRSS46E5RG02 174 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 AJUBAQ96IF1 538 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 RCHY1Q96PM5 261 aa11.31□□□□□ -0.6
TCOF1-202ENST00000377797 C19orf54Q5BKX5 351 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 C2CD3Q4AC94 2353 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 BUB3O43684 328 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 IGHG2P01859 326 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 RNF114Q9Y508 228 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 LY6LH3BQJ8 138 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 SLAQ13239 276 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 ORMDL2Q53FV1 153 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 AGPAT4-IT1Q9H0P7 198 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 LAMTOR2Q9Y2Q5 125 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 RPL35AP18077 110 aaKnown RBP11.3□□□□□ -0.6
TCOF1-202ENST00000377797 DEFB136Q30KP8 78 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 C18orf32Q8TCD1 76 aa11.3□□□□□ -0.6
TCOF1-202ENST00000377797 LINC01548A6NM66 108 aa11.29□□□□□ -0.6
TCOF1-202ENST00000377797 CRXO43186 299 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-202ENST00000377797 HOXD3P31249 432 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-202ENST00000377797 Q0VG73 95 aa11.29□□□□□ -0.6
TCOF1-202ENST00000377797 CYSLTR1Q9Y271 337 aa11.29□□□□□ -0.6
TCOF1-202ENST00000377797 F6UB75 175 aa11.29□□□□□ -0.6
TCOF1-202ENST00000377797 DEFB104AQ8WTQ1 72 aa11.29□□□□□ -0.6
TCOF1-202ENST00000377797 C3orf79P0CE67 100 aa11.28□□□□□ -0.6
TCOF1-202ENST00000377797 IGHV3-73A0A0B4J1V6 119 aa11.28□□□□□ -0.6
TCOF1-202ENST00000377797 LGALS1P09382 135 aaKnown RBP11.28□□□□□ -0.6
TCOF1-202ENST00000377797 COX6CP09669 75 aa11.28□□□□□ -0.6
TCOF1-202ENST00000377797 TRAV9-2A0A087WT02 112 aa11.28□□□□□ -0.6
TCOF1-202ENST00000377797 WI2-2373I1.2A0A1W2PRP0 233 aa11.28□□□□□ -0.6
TCOF1-202ENST00000377797 SMIM13P0DJ93 91 aa11.28□□□□□ -0.6
TCOF1-202ENST00000377797 LOXL1Q08397 574 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-202ENST00000377797 CRYGBP07316 175 aa11.28□□□□□ -0.6
TCOF1-202ENST00000377797 LGALS3P17931 250 aaKnown RBP11.28□□□□□ -0.6
TCOF1-202ENST00000377797 A0A087WWL8 130 aa11.27□□□□□ -0.6
TCOF1-202ENST00000377797 TNFRSF13BO14836 293 aaPredicted RBP11.27□□□□□ -0.6
TCOF1-202ENST00000377797 PRSS2P07478 247 aa11.27□□□□□ -0.6
TCOF1-202ENST00000377797 ZNF415Q09FC8 603 aa11.27□□□□□ -0.61
TCOF1-202ENST00000377797 FAM104BQ5XKR9 115 aa11.27□□□□□ -0.61
TCOF1-202ENST00000377797 A6NDX4 124 aa11.27□□□□□ -0.61
TCOF1-202ENST00000377797 INSP01308 110 aa11.27□□□□□ -0.61
TCOF1-202ENST00000377797 HTN3P15516 51 aa11.27□□□□□ -0.61
TCOF1-202ENST00000377797 ZNF503Q96F45 646 aa11.27□□□□□ -0.61
TCOF1-202ENST00000377797 ALKBH7Q9BT30 221 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-202ENST00000377797 TRAV12-2A0A075B6T6 113 aa11.27□□□□□ -0.61
TCOF1-202ENST00000377797 IFI27P40305 119 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-202ENST00000377797 XCL2Q9UBD3 114 aa11.27□□□□□ -0.61
TCOF1-202ENST00000377797 A0A1W2PPR1 153 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 FOXE3Q13461 319 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 LAGE3Q14657 143 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 ANXA2RQ3ZCQ2 193 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 ZNF876PQ49A33 203 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 TMEM262E9PQX1 116 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 DLEU1O43261 78 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 TRGV1A0A0A0MS02 117 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 C2orf88Q9BSF0 95 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 MS4A6AQ9H2W1 248 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 KLK9Q9UKQ9 250 aa11.26□□□□□ -0.61
TCOF1-202ENST00000377797 TRGV4A0A0C4DH28 118 aa11.25□□□□□ -0.61
TCOF1-202ENST00000377797 PYGO2Q9BRQ0 406 aa11.25□□□□□ -0.61
TCOF1-202ENST00000377797 CDKN1BP46527 198 aa11.25□□□□□ -0.61
TCOF1-202ENST00000377797 EBI3Q14213 229 aa11.25□□□□□ -0.61
TCOF1-202ENST00000377797 OR2K2Q8NGT1 345 aa11.25□□□□□ -0.61
TCOF1-202ENST00000377797 MEGF9Q9H1U4 602 aa11.25□□□□□ -0.61
TCOF1-202ENST00000377797 EGR2P11161 476 aaPredicted RBP11.25□□□□□ -0.61
TCOF1-202ENST00000377797 SUMO2P61956 95 aaKnown RBP11.25□□□□□ -0.61
TCOF1-202ENST00000377797 VCX2Q9H322 139 aa11.25□□□□□ -0.61
TCOF1-202ENST00000377797 KNCNA6PVL3 124 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms