RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 ZNF562Q6V9R5 426 aa10.94□□□□□ -0.66
CLCNKA-202ENST00000375692 NPBQ8NG41 125 aa10.94□□□□□ -0.66
CLCNKA-202ENST00000375692 NDUFA3O95167 84 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 CTSGP08311 255 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 ZNF672Q499Z4 452 aaPredicted RBP10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 NEGR1Q7Z3B1 354 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 GTSCR1Q86UQ5 136 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 DYNAPQ8N1N2 210 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 SMIM13P0DJ93 91 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 SAMD5Q5TGI4 173 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 S100A7AQ86SG5 101 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 RNF182Q8N6D2 247 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 ARPC1AQ92747 370 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 PSMG3-AS1Q96PY0 264 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 NPFFR1Q9GZQ6 430 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 SPG11Q96JI7 2443 aa10.93□□□□□ -0.66
CLCNKA-202ENST00000375692 FCER1GP30273 86 aa10.92□□□□□ -0.66
CLCNKA-202ENST00000375692 FOXC2Q99958 501 aa10.92□□□□□ -0.66
CLCNKA-202ENST00000375692 CENPEQ02224 2701 aa10.92□□□□□ -0.66
CLCNKA-202ENST00000375692 IGHV3-66A0A0C4DH42 116 aa10.92□□□□□ -0.66
CLCNKA-202ENST00000375692 FABP2P12104 132 aa10.92□□□□□ -0.66
CLCNKA-202ENST00000375692 TMEM158Q8WZ71 300 aa10.92□□□□□ -0.66
CLCNKA-202ENST00000375692 FABP5P3A8MUU1 101 aa10.91□□□□□ -0.66
CLCNKA-202ENST00000375692 LY6G5BQ8NDX9 201 aa10.91□□□□□ -0.66
CLCNKA-202ENST00000375692 FBLL1A6NHQ2 334 aaKnown RBP10.91□□□□□ -0.66
CLCNKA-202ENST00000375692 IL17RELQ6ZVW7 336 aa10.91□□□□□ -0.66
CLCNKA-202ENST00000375692 CHAC1Q9BUX1 264 aa10.91□□□□□ -0.66
CLCNKA-202ENST00000375692 ZMAT4Q9H898 229 aa10.91□□□□□ -0.66
CLCNKA-202ENST00000375692 MAP1AP78559 2803 aaPredicted RBP10.91□□□□□ -0.66
CLCNKA-202ENST00000375692 IGHV3OR16-13A0A075B7E8 117 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 IGHV3-74A0A0B4J1X5 117 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 DTX2Q86UW9 622 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 TTC9CQ8N5M4 171 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 OR11H6Q8NGC7 330 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 TMEM238C9JI98 176 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 IGKCP01834 107 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 TRGV3P03979 118 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 ZC2HC1BQ5TFG8 222 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 TMEM160Q9NX00 188 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 C11orf21Q9P2W6 132 aa10.9□□□□□ -0.66
CLCNKA-202ENST00000375692 UBR5O95071 2799 aaPredicted RBP10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 TRBV25-1A0A075B6N4 114 aa10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 RPL24P83731 157 aaKnown RBP10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 OR5A1Q8NGJ0 315 aa10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 ZNF48Q96MX3 618 aaPredicted RBP10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 TRAV26-2A0A0B4J265 109 aa10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 CEACAM3P40198 252 aa10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 Q6ZQT7 251 aa10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 CNFNQ9BYD5 112 aa10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 NXT2Q9NPJ8 142 aaKnown RBP10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 NHP2Q9NX24 153 aaKnown RBP10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 CSMD2Q7Z408 3487 aa10.89□□□□□ -0.67
CLCNKA-202ENST00000375692 TRAV40A0A0B4J280 105 aa10.88□□□□□ -0.67
CLCNKA-202ENST00000375692 IGKV3D-20A0A0C4DH25 116 aa10.88□□□□□ -0.67
CLCNKA-202ENST00000375692 LINC01546A6NGU7 62 aa10.88□□□□□ -0.67
CLCNKA-202ENST00000375692 MAPKAPK5-AS1Q8N8E1 139 aa10.88□□□□□ -0.67
CLCNKA-202ENST00000375692 SRSF1Q07955 248 aaKnown RBP eCLIP10.88□□□□□ -0.67
CLCNKA-202ENST00000375692 KMT2BQ9UMN6 2715 aaPredicted RBP10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 IGHV3-49A0A0A0MS15 119 aa10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 SMIM17P0DL12 118 aa10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 PIFOQ8TCI5 191 aa10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 MRPL35Q9NZE8 188 aaKnown RBP10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 TEX48A0A1B0GUV7 120 aa10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 DPM2O94777 84 aa10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 PHLDA1Q8WV24 401 aaPredicted RBP10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 HIGD1BQ9P298 99 aa10.87□□□□□ -0.67
CLCNKA-202ENST00000375692 AGRNO00468 2067 aa10.86□□□□□ -0.67
CLCNKA-202ENST00000375692 IGLV2-18A0A075B6J9 118 aa10.86□□□□□ -0.67
CLCNKA-202ENST00000375692 ODF3BA8MYP8 253 aa10.86□□□□□ -0.67
CLCNKA-202ENST00000375692 Q8N8P6 123 aa10.86□□□□□ -0.67
CLCNKA-202ENST00000375692 LINC01559Q495D7 138 aa10.86□□□□□ -0.67
CLCNKA-202ENST00000375692 AGPAT4-IT1Q9H0P7 198 aa10.86□□□□□ -0.67
CLCNKA-202ENST00000375692 CELSR2Q9HCU4 2923 aa10.86□□□□□ -0.67
CLCNKA-202ENST00000375692 IGHV7-81A0A0B4J1V7 117 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 ZNF207O43670 478 aaKnown RBP10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 CLEC3BP05452 202 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 SRSF2Q01130 221 aaKnown RBP10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 UBTD1Q9HAC8 227 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 UFC1Q9Y3C8 167 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 VPS13CQ709C8 3753 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 PRTN3P24158 256 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 EFNA4P52798 201 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 C15orf32Q32M92 178 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 CEND1Q8N111 149 aa10.85□□□□□ -0.67
CLCNKA-202ENST00000375692 BUB3O43684 328 aa10.84□□□□□ -0.67
CLCNKA-202ENST00000375692 C11orf71Q6IPW1 123 aa10.84□□□□□ -0.67
CLCNKA-202ENST00000375692 VMO1Q7Z5L0 202 aa10.84□□□□□ -0.67
CLCNKA-202ENST00000375692 ZFHX3Q15911 3703 aa10.84□□□□□ -0.67
CLCNKA-202ENST00000375692 GOSR1O95249 250 aa10.84□□□□□ -0.67
CLCNKA-202ENST00000375692 TMEM11P17152 192 aa10.84□□□□□ -0.67
CLCNKA-202ENST00000375692 SPRY2O43597 315 aa10.83□□□□□ -0.68
CLCNKA-202ENST00000375692 ATP5LO75964 103 aa10.83□□□□□ -0.68
CLCNKA-202ENST00000375692 ECSCRQ19T08 205 aa10.83□□□□□ -0.68
CLCNKA-202ENST00000375692 Q8N6K4 173 aa10.83□□□□□ -0.68
CLCNKA-202ENST00000375692 NRACQ8N912 160 aa10.83□□□□□ -0.68
CLCNKA-202ENST00000375692 TM2D2Q9BX73 214 aa10.83□□□□□ -0.68
CLCNKA-202ENST00000375692 WFDC2Q14508 124 aa10.83□□□□□ -0.68
CLCNKA-202ENST00000375692 MYOZ3Q8TDC0 251 aa10.83□□□□□ -0.68
CLCNKA-202ENST00000375692 ZFAND3Q9H8U3 227 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms