RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 DEFB114Q30KQ6 69 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 CD300EQ496F6 205 aaPredicted RBP3.1□□□□□ -1.91
MCF2-201ENST00000338585 PRR31Q5SQ13 230 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 SAPCD1Q5SSQ6 148 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 TMEM78Q5T7P6 136 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 PRR9Q5T870 116 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 C9orf47Q6ZRZ4 202 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 OR8A1Q8NGG7 326 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 OR2D3Q8NGH3 330 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 DYNLRB2Q8TF09 96 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 GTSF1Q8WW33 167 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 DAZAP1Q96EP5 407 aaKnown RBP3.1□□□□□ -1.91
MCF2-201ENST00000338585 IMMP2LQ96T52 175 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 NEU1Q99519 415 aa3.1□□□□□ -1.91
MCF2-201ENST00000338585 AGRNO00468 2067 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 HIGD1CA8MV81 97 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 IGKV3-20P01619 116 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 ID1P41134 155 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 ZNF124Q15973 351 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 MRPL54Q6P161 138 aaKnown RBP3.09□□□□□ -1.91
MCF2-201ENST00000338585 COX8CQ7Z4L0 72 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 OR10J6PQ8NGY7 276 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 SPATA3Q8NHX4 192 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 TSKUQ8WUA8 353 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 NDFIP1Q9BT67 221 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 CLEC5AQ9NY25 188 aa3.09□□□□□ -1.91
MCF2-201ENST00000338585 FBLL1A6NHQ2 334 aaKnown RBP3.09□□□□□ -1.92
MCF2-201ENST00000338585 C1orf196B1AJZ1 125 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 PHOX2AO14813 284 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 SMUG1Q53HV7 270 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 FAM162BQ5T6X4 162 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 RBPMS2Q6ZRY4 209 aaKnown RBP3.09□□□□□ -1.92
MCF2-201ENST00000338585 ZNF575Q86XF7 245 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 NDUFA11Q86Y39 141 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 ZFAND2AQ8N6M9 145 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 NUP35Q8NFH5 326 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 BTF3L4Q96K17 158 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 PGLYRP4Q96LB8 373 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 SRD5A3Q9H8P0 318 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 BIN3Q9NQY0 253 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 C11orf21Q9P2W6 132 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 TENM1Q9UKZ4 2725 aa3.09□□□□□ -1.92
MCF2-201ENST00000338585 ATRQ13535 2644 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 A0A0J9YX75 114 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 KNCNA6PVL3 124 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 SAP30O75446 220 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 TYMSP04818 313 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 DEFB131AP59861 70 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 SNRPD3P62318 126 aaKnown RBP3.08□□□□□ -1.92
MCF2-201ENST00000338585 PAFAH1B2P68402 229 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 CFAP161Q6P656 301 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 FRZBQ92765 325 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 FAM19A4Q96LR4 140 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 LINC00477Q96M19 166 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 IGKV3D-20A0A0C4DH25 116 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 MUC21A0A0G2JKD1 596 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 MUC21A0A140T8X8 626 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 A0A1B0GUS0 222 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 GRIFINA4D1Z8 144 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 TMEM189A5PLL7 270 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 FABP5P3A8MUU1 101 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 A8MWL6 223 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 ORM1P02763 201 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 SSTP61278 116 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 FABP9Q0Z7S8 132 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 KRTAP24-1Q3LI83 254 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 CT83Q5H943 113 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 MUC21Q5SSG8 566 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 SAMD13Q5VXD3 122 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 OR4B1Q8NGF8 309 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 TPPP3Q9BW30 176 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 PPP1R14DQ9NXH3 145 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 NAT8BQ9UHF3 227 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 ZNF256Q9Y2P7 627 aaPredicted RBP3.08□□□□□ -1.92
MCF2-201ENST00000338585 MAST4O15021 2626 aa3.08□□□□□ -1.92
MCF2-201ENST00000338585 TRAV9-1A0A075B6T8 112 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 M0R2Z0 102 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BKO60814 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BJP06899 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 TRGC1P0CF51 173 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BOP23527 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BBP33778 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 RNASE4P34096 147 aaKnown RBP3.07□□□□□ -1.92
MCF2-201ENST00000338585 CAMPP49913 170 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BDP58876 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 RAB5BP61020 215 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BCP62807 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST2H2BEQ16778 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 ACTL10Q5JWF8 245 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.07□□□□□ -1.92
MCF2-201ENST00000338585 PRIMA1Q86XR5 153 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 APRG1Q8IVJ8 170 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 LINC00482Q8N8I6 264 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BHQ93079 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BNQ99877 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 HIST1H2BMQ99879 126 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 CITED1Q99966 193 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 SAV1Q9H4B6 383 aaPredicted RBP3.07□□□□□ -1.92
MCF2-201ENST00000338585 MAP6D1Q9H9H5 199 aa3.07□□□□□ -1.92
MCF2-201ENST00000338585 SIGLEC8Q9NYZ4 499 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms