RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TRBV19A0A075B6N1 114 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 A0A1W2PRE2 83 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 C2orf70A6NJV1 201 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 OR9G4Q8NGQ1 327 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 ARL2-SNX15V9GYD0 113 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 PGPA6NDG6 321 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 PF4P02776 101 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 OCC1Q8TAD7 63 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 Q9H3A6 140 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 TP53TG3Q9ULZ0 132 aa7.62□□□□□ -1.19
HMGB3-201ENST00000325307 MRPS12O15235 138 aaKnown RBP7.61□□□□□ -1.19
HMGB3-201ENST00000325307 SLC25A5P05141 298 aaKnown RBP7.61□□□□□ -1.19
HMGB3-201ENST00000325307 CBLN1P23435 193 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 Q6ZWC4 215 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 BOD1L2Q8IYS8 172 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 EXOC3-AS1Q8N2X6 119 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 STPG4Q8N801 248 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 SMAD5-AS1Q9Y6J3 95 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 HELTA6NFD8 242 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 ADARB2-AS1A8MUL3 147 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 SLC17A3O00476 420 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 NUPR1O60356 82 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 CMTM2Q8TAZ6 248 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 AAMDCQ9H7C9 122 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 SCGB1D1O95968 90 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 PAFAH1B2P68402 229 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 FHL3Q13643 280 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 TDRG1Q3Y452 100 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 DYNLRB2Q8TF09 96 aa7.61□□□□□ -1.19
HMGB3-201ENST00000325307 H7BYZ3 331 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 OVOL1O14753 267 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 IGFL4Q6B9Z1 124 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 SFRP2Q96HF1 295 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 SIVA1O15304 175 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 PRB4P10163 310 aaPredicted RBP7.6□□□□□ -1.19
HMGB3-201ENST00000325307 MYCNOSP40205 109 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 PDE6HQ13956 83 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 TMEM183BQ1AE95 376 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 IGLV2-8P01709 118 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 GNG5P63218 68 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 PSG9Q00887 426 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 WFDC3Q8IUB2 231 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 ZNF738Q8NE65 137 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 BTF3L4Q96K17 158 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 C16orf92Q96LL3 132 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 IGF2BP2-AS1Q96M15 143 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 OTORQ9NRC9 128 aa7.6□□□□□ -1.19
HMGB3-201ENST00000325307 C9JCJ5 164 aa7.59□□□□□ -1.19
HMGB3-201ENST00000325307 G3V4G9 280 aa7.59□□□□□ -1.19
HMGB3-201ENST00000325307 PRR27Q6MZM9 219 aa7.59□□□□□ -1.19
HMGB3-201ENST00000325307 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.59□□□□□ -1.19
HMGB3-201ENST00000325307 TMEM256Q8N2U0 113 aa7.59□□□□□ -1.19
HMGB3-201ENST00000325307 C3orf56Q8N813 242 aa7.59□□□□□ -1.19
HMGB3-201ENST00000325307 NRN1Q9NPD7 142 aa7.59□□□□□ -1.19
HMGB3-201ENST00000325307 A0A087X0K7 114 aa7.59□□□□□ -1.2
HMGB3-201ENST00000325307 CSN1S1P47710 185 aa7.59□□□□□ -1.2
HMGB3-201ENST00000325307 C5orf17Q8NAS9 161 aa7.59□□□□□ -1.2
HMGB3-201ENST00000325307 TMEM158Q8WZ71 300 aa7.59□□□□□ -1.2
HMGB3-201ENST00000325307 CENPWQ5EE01 88 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 LYPD1Q8N2G4 141 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 RNF182Q8N6D2 247 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 SLC50A1Q9BRV3 221 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 VCX2Q9H322 139 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 OR11H12B2RN74 326 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 M0R3E3 92 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 CSN3P07498 182 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 HLA-DMBP28068 263 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 BATFQ16520 125 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 C12orf54Q6X4T0 127 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 RBPMS2Q6ZRY4 209 aaKnown RBP7.58□□□□□ -1.2
HMGB3-201ENST00000325307 OR11H2Q8NH07 326 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 LINC00479Q96M42 142 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 ZNF331Q9NQX6 463 aaPredicted RBP7.58□□□□□ -1.2
HMGB3-201ENST00000325307 EPDR1Q9UM22 224 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 TRAV25A0A0B4J276 109 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 PEX7O00628 323 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 WIPF1O43516 503 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 ADAMTSL5Q6ZMM2 481 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 OR4B1Q8NGF8 309 aa7.58□□□□□ -1.2
HMGB3-201ENST00000325307 TENM1Q9UKZ4 2725 aa7.57□□□□□ -1.2
HMGB3-201ENST00000325307 CKS1BP61024 79 aa7.57□□□□□ -1.2
HMGB3-201ENST00000325307 LY96Q9Y6Y9 160 aa7.57□□□□□ -1.2
HMGB3-201ENST00000325307 GOLT1AQ6ZVE7 132 aa7.57□□□□□ -1.2
HMGB3-201ENST00000325307 SGK494Q96LW2 274 aa7.57□□□□□ -1.2
HMGB3-201ENST00000325307 MS4A6AQ9H2W1 248 aa7.57□□□□□ -1.2
HMGB3-201ENST00000325307 TRAV34A0A0B4J273 112 aa7.56□□□□□ -1.2
HMGB3-201ENST00000325307 FBLL1A6NHQ2 334 aaKnown RBP7.56□□□□□ -1.2
HMGB3-201ENST00000325307 ZNF253O75346 499 aa7.56□□□□□ -1.2
HMGB3-201ENST00000325307 V9GYV3 84 aa7.56□□□□□ -1.2
HMGB3-201ENST00000325307 ZNF705FA8MVS1 300 aaPredicted RBP7.56□□□□□ -1.2
HMGB3-201ENST00000325307 TCRAP04437 139 aa7.56□□□□□ -1.2
HMGB3-201ENST00000325307 UBE2G1P62253 170 aa7.56□□□□□ -1.2
HMGB3-201ENST00000325307 Q0VG73 95 aa7.56□□□□□ -1.2
HMGB3-201ENST00000325307 MRPS16Q9Y3D3 137 aaKnown RBP7.56□□□□□ -1.2
HMGB3-201ENST00000325307 LOC102724200A0A096LPH7 203 aaPredicted RBP7.56□□□□□ -1.2
HMGB3-201ENST00000325307 K7EQM0 130 aa7.56□□□□□ -1.2
HMGB3-201ENST00000325307 VAMP8Q9BV40 100 aa7.56□□□□□ -1.2
HMGB3-201ENST00000325307 FBN1P35555 2871 aaKnown RBP7.56□□□□□ -1.2
HMGB3-201ENST00000325307 TRAV9-1A0A075B6T8 112 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 FRMD6-AS1P0C7T7 363 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms