RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 K7EIL1 84 aa11.29□□□□□ -0.6
PDLIM5-202ENST00000318007 TMEM241Q24JQ0 296 aa11.29□□□□□ -0.6
PDLIM5-202ENST00000318007 MUC21Q5SSG8 566 aa11.29□□□□□ -0.6
PDLIM5-202ENST00000318007 LINC01551Q86U37 167 aa11.29□□□□□ -0.6
PDLIM5-202ENST00000318007 MRAPQ8TCY5 172 aa11.29□□□□□ -0.6
PDLIM5-202ENST00000318007 RNASE7Q9H1E1 156 aaKnown RBP11.29□□□□□ -0.6
PDLIM5-202ENST00000318007 ZMAT5Q9UDW3 170 aaKnown RBP11.29□□□□□ -0.6
PDLIM5-202ENST00000318007 LOC102724200A0A096LPH7 203 aaPredicted RBP11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 M0R036 132 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 RBMY1A1P0DJD3 496 aaKnown RBP11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 RBMY1CP0DJD4 496 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 RBMY1FQ15415 496 aaKnown RBP11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 TMEM183AQ8IXX5 376 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 TMSB15BA0A087X1C1 80 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 FRMD6-AS1P0C7T7 363 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 CRIP1P50238 77 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 NUTF2P61970 127 aaKnown RBP11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 RPL23P62829 140 aaKnown RBP11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 SAPCD1Q5SSQ6 148 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 FAM19A4Q96LR4 140 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 NAT8Q9UHE5 227 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 ZFP30Q9Y2G7 519 aa11.28□□□□□ -0.6
PDLIM5-202ENST00000318007 C9JCJ5 164 aa11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 CRXO43186 299 aaPredicted RBP11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 S100A9P06702 114 aaKnown RBP11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 RPL19P84098 196 aaKnown RBP11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 MLST8Q9BVC4 326 aa11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 SEC11CQ9BY50 192 aa11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 GIG44P09565 113 aaPredicted RBP11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 LEPP41159 167 aa11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 DEFB135Q30KP9 77 aa11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 KPRPQ5T749 579 aaPredicted RBP11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 SDF2L1Q9HCN8 221 aa11.27□□□□□ -0.61
PDLIM5-202ENST00000318007 TMEM208Q9BTX3 173 aa11.26□□□□□ -0.61
PDLIM5-202ENST00000318007 CSTL1Q9H114 145 aa11.26□□□□□ -0.61
PDLIM5-202ENST00000318007 C7orf71A4D174 169 aa11.25□□□□□ -0.61
PDLIM5-202ENST00000318007 KLLNB2CW77 178 aa11.25□□□□□ -0.61
PDLIM5-202ENST00000318007 SH2D1AO60880 128 aa11.25□□□□□ -0.61
PDLIM5-202ENST00000318007 TSPOP30536 169 aa11.25□□□□□ -0.61
PDLIM5-202ENST00000318007 ERVFC1-1P60608 527 aa11.25□□□□□ -0.61
PDLIM5-202ENST00000318007 FAM74A3Q4VXF1 159 aa11.25□□□□□ -0.61
PDLIM5-202ENST00000318007 CRISP2P16562 243 aa11.25□□□□□ -0.61
PDLIM5-202ENST00000318007 FBLL1A6NHQ2 334 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-202ENST00000318007 ORM1P02763 201 aa11.24□□□□□ -0.61
PDLIM5-202ENST00000318007 PFN1P07737 140 aaKnown RBP11.24□□□□□ -0.61
PDLIM5-202ENST00000318007 FAM162BQ5T6X4 162 aa11.24□□□□□ -0.61
PDLIM5-202ENST00000318007 RETNQ9HD89 108 aa11.24□□□□□ -0.61
PDLIM5-202ENST00000318007 C11orf21Q9P2W6 132 aa11.24□□□□□ -0.61
PDLIM5-202ENST00000318007 TRBV6-1A0A0K0K1D8 114 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 A8MTW9 85 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 KRBOX1C9JBD0 128 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 INSP01308 110 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 DEFA6Q01524 100 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 IBA57Q5T440 356 aaKnown RBP11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 ISOC2Q96AB3 205 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 DAZAP1Q96EP5 407 aaKnown RBP11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 LENEPQ9Y5L5 61 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 NDUFS6O75380 124 aaKnown RBP11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 GZMBP10144 247 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 SSTP61278 116 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 ODF3Q96PU9 254 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 LINC01587Q99440 93 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 TP53TG3Q9ULZ0 132 aa11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 TIMM8BQ9Y5J9 83 aaPredicted RBP11.23□□□□□ -0.61
PDLIM5-202ENST00000318007 APOC4P55056 127 aa11.22□□□□□ -0.61
PDLIM5-202ENST00000318007 NUDT10Q8NFP7 164 aa11.22□□□□□ -0.61
PDLIM5-202ENST00000318007 NUDT11Q96G61 164 aa11.22□□□□□ -0.61
PDLIM5-202ENST00000318007 SFRP2Q96HF1 295 aa11.22□□□□□ -0.61
PDLIM5-202ENST00000318007 TRAV21A0A0B4J279 112 aa11.21□□□□□ -0.61
PDLIM5-202ENST00000318007 GRIFINA4D1Z8 144 aa11.21□□□□□ -0.61
PDLIM5-202ENST00000318007 FABP5P3A8MUU1 101 aa11.21□□□□□ -0.61
PDLIM5-202ENST00000318007 SPRY2O43597 315 aa11.21□□□□□ -0.61
PDLIM5-202ENST00000318007 ZNF324O75467 553 aaPredicted RBP11.21□□□□□ -0.61
PDLIM5-202ENST00000318007 P01737 135 aa11.21□□□□□ -0.61
PDLIM5-202ENST00000318007 C1orf158Q8N1D5 194 aa11.21□□□□□ -0.61
PDLIM5-202ENST00000318007 CARHSP1Q9Y2V2 147 aaKnown RBP11.21□□□□□ -0.61
PDLIM5-202ENST00000318007 ZNF705GA8MUZ8 300 aaPredicted RBP11.21□□□□□ -0.62
PDLIM5-202ENST00000318007 ANXA2RQ3ZCQ2 193 aa11.21□□□□□ -0.62
PDLIM5-202ENST00000318007 C10orf91Q5T1B1 145 aa11.21□□□□□ -0.62
PDLIM5-202ENST00000318007 MORN3Q6PF18 240 aaPredicted RBP11.21□□□□□ -0.62
PDLIM5-202ENST00000318007 TPPP3Q9BW30 176 aa11.21□□□□□ -0.62
PDLIM5-202ENST00000318007 GNRH2O43555 120 aa11.2□□□□□ -0.62
PDLIM5-202ENST00000318007 RNF212Q495C1 297 aa11.2□□□□□ -0.62
PDLIM5-202ENST00000318007 Q6AWC8 147 aa11.2□□□□□ -0.62
PDLIM5-202ENST00000318007 ATRAIDQ6UW56 229 aa11.2□□□□□ -0.62
PDLIM5-202ENST00000318007 FAM159AQ6UWV7 190 aa11.2□□□□□ -0.62
PDLIM5-202ENST00000318007 SBSPONQ8IVN8 264 aa11.2□□□□□ -0.62
PDLIM5-202ENST00000318007 OR2D3Q8NGH3 330 aa11.2□□□□□ -0.62
PDLIM5-202ENST00000318007 IGKV3D-20A0A0C4DH25 116 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 MUC21A0A0G2JKD1 596 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 MUC21A0A140T8X8 626 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 B4DEV8 164 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 TCL1AP56279 114 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 CSNK1G2-AS1Q8NCQ2 148 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 SMIM12Q96EX1 92 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 CLUHP3Q96NS8 147 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 C1QTNF4Q9BXJ3 329 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 RPS10P5Q9NQ39 176 aa11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 PRKDCP78527 4128 aaKnown RBP11.19□□□□□ -0.62
PDLIM5-202ENST00000318007 COL7A1Q02388 2944 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms