RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 ACANP16112 2415 aa8.21□□□□□ -1.1
COL3A1-202ENST00000317840 TRAV40A0A0B4J280 105 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 TNFRSF6BO95407 300 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 EFNA4P52798 201 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 OR4X2Q8NGF9 303 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 IGLV11-55A0A075B6I3 123 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 IL17RELQ6ZVW7 336 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 TMEM158Q8WZ71 300 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 C16orf92Q96LL3 132 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 PIMREGQ9BSJ6 248 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 WI2-2373I1.2A0A1W2PRP0 233 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 PPBPP02775 128 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 SMIM13P0DJ93 91 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 ZC2HC1BQ5TFG8 222 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 DYNAPQ8N1N2 210 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 OR1N2Q8NGR9 330 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 METTL26Q96S19 204 aa8.2□□□□□ -1.1
COL3A1-202ENST00000317840 NHP2Q9NX24 153 aaKnown RBP8.2□□□□□ -1.1
COL3A1-202ENST00000317840 SAP30O75446 220 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 CTSGP08311 255 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 FOXE3Q13461 319 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 C2orf91Q6ZV80 131 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 NXT2Q9NPJ8 142 aaKnown RBP8.19□□□□□ -1.1
COL3A1-202ENST00000317840 M0R381 172 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 ARL3P36405 182 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 PRRC2AP48634 2157 aaKnown RBP8.19□□□□□ -1.1
COL3A1-202ENST00000317840 PRAC2D3DTV9 90 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 TGFAP01135 160 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 DUX5Q96PT3 197 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 JKAMPQ9P055 326 aa8.19□□□□□ -1.1
COL3A1-202ENST00000317840 TRAV26-2A0A0B4J265 109 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 TRBV6-1A0A0K0K1D8 114 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 C9orf118A6NHY6 69 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 G3V318 75 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 NDUFA3O95167 84 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 IGKCP01834 107 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 PF4V1P10720 104 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 ZNF493Q6ZR52 646 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 IGHV3-11P01762 117 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 JMJD1CQ15652 2540 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 MGPP08493 103 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 OR11H6Q8NGC7 330 aa8.18□□□□□ -1.1
COL3A1-202ENST00000317840 LY6LH3BQJ8 138 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 H3BRM9 83 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 GAS8-AS1O95177 125 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 PAX2Q02962 417 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 ITLN2Q8WWU7 325 aaPredicted RBP8.17□□□□□ -1.1
COL3A1-202ENST00000317840 A0A096LNJ9 63 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 H3BVH4 76 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 K7EMI3 77 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 M0R1W7 72 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 DPM2O94777 84 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 SMIM17P0DL12 118 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 HOXB4P17483 251 aaPredicted RBP8.17□□□□□ -1.1
COL3A1-202ENST00000317840 SAMD5Q5TGI4 173 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 DTX2Q86UW9 622 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 BOD1L2Q8IYS8 172 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 LRBAP50851 2863 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 SAA4P35542 130 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 RAB9AP51151 201 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 NPBQ8NG41 125 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 CFHR4Q92496 578 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 HIST1H4GQ99525 98 aa8.17□□□□□ -1.1
COL3A1-202ENST00000317840 ATP6V0E1O15342 81 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 SPRY2O43597 315 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 TTC9CQ8N5M4 171 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 DEFB104AQ8WTQ1 72 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 TMEM190Q8WZ59 177 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 TMEM8BA6NDV4 472 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 K7ERJ3 54 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 MRPS12O15235 138 aaKnown RBP8.16□□□□□ -1.1
COL3A1-202ENST00000317840 IGHV7-81A0A0B4J1V7 117 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 ATP5LO75964 103 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 SLC50A1Q9BRV3 221 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 CHAC1Q9BUX1 264 aa8.16□□□□□ -1.1
COL3A1-202ENST00000317840 ZFP36P26651 326 aaKnown RBP8.15□□□□□ -1.1
COL3A1-202ENST00000317840 C16orf54Q6UWD8 224 aa8.15□□□□□ -1.1
COL3A1-202ENST00000317840 EEF1AKMT3Q96AZ1 226 aa8.15□□□□□ -1.1
COL3A1-202ENST00000317840 AGPAT4-IT1Q9H0P7 198 aa8.15□□□□□ -1.1
COL3A1-202ENST00000317840 SCGB1D4Q6XE38 83 aa8.15□□□□□ -1.11
COL3A1-202ENST00000317840 GLMPQ8WWB7 406 aa8.15□□□□□ -1.11
COL3A1-202ENST00000317840 MRPL35Q9NZE8 188 aaKnown RBP8.15□□□□□ -1.11
COL3A1-202ENST00000317840 PHLDA3Q9Y5J5 127 aa8.15□□□□□ -1.11
COL3A1-202ENST00000317840 DOPEY1Q5JWR5 2465 aa8.14□□□□□ -1.11
COL3A1-202ENST00000317840 K7EP34 96 aa8.14□□□□□ -1.11
COL3A1-202ENST00000317840 TRGV3P03979 118 aa8.14□□□□□ -1.11
COL3A1-202ENST00000317840 ATP5G2Q06055 141 aa8.14□□□□□ -1.11
COL3A1-202ENST00000317840 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.14□□□□□ -1.11
COL3A1-202ENST00000317840 FXYD2P54710 66 aa8.14□□□□□ -1.11
COL3A1-202ENST00000317840 LAGE3Q14657 143 aa8.14□□□□□ -1.11
COL3A1-202ENST00000317840 JMJD8Q96S16 334 aa8.14□□□□□ -1.11
COL3A1-202ENST00000317840 SMAD5-AS1Q9Y6J3 95 aa8.14□□□□□ -1.11
COL3A1-202ENST00000317840 A0A1W2PPM0 123 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 A0A1W2PPR1 153 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 OR11H12B2RN74 326 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 F5H697 171 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 BUB3O43684 328 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 LY6G5BQ8NDX9 201 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 OR11H1Q8NG94 326 aa8.13□□□□□ -1.11
COL3A1-202ENST00000317840 OR11H2Q8NH07 326 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms